Analysis of interatomic Contacts of Structural Units in PDB entry:
7V8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V8B entry

There are 2 chains in PDB entry 7V8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 330SER 530
F
 SER 19ALA 614
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 7V8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
338 343Right-handed alpha
Helix 2
AA2
A
349 353Right-handed 310
Helix 3
AA3
A
365 370Right-handed alpha
Helix 4
AA4
A
385 389Right-handed 310
Helix 5
AA5
A
406 410Right-handed 310
Helix 6
AA6
A
416 422Right-handed alpha
Helix 7
AA7
A
438 443Right-handed alpha
Helix 8
AA8
A
501 506Right-handed alpha
Helix 9
AA9
F
20 53Right-handed alpha
Helix 10
AB1
F
55 58Right-handed 310
Helix 11
AB2
F
59 80Right-handed alpha
Helix 12
AB3
F
90 101Right-handed alpha
Helix 13
AB4
F
103 108Right-handed 310
Helix 14
AB5
F
109 129Right-handed alpha
Helix 15
AB6
F
147 154Right-handed alpha
Helix 16
AB7
F
157 172Right-handed alpha
Helix 17
AB8
F
175 194Right-handed alpha
Helix 18
AB9
F
198 205Right-handed alpha
Helix 19
AC1
F
206 208Right-handed 310
Helix 20
AC2
F
220 231Right-handed alpha
Helix 21
AC3
F
233 252Right-handed alpha
Helix 22
AC4
F
275 281Right-handed 310
Helix 23
AC5
F
293 300Right-handed alpha
Helix 24
AC6
F
303 319Right-handed alpha
Helix 25
AC7
F
326 331Right-handed alpha
Helix 26
AC8
F
365 385Right-handed alpha
Helix 27
AC9
F
389 393Right-handed 310
Helix 28
AD1
F
399 412Right-handed alpha
Helix 29
AD2
F
414 421Right-handed alpha
Helix 30
AD3
F
431 447Right-handed alpha
Helix 31
AD4
F
449 466Right-handed alpha
Helix 32
AD5
F
473 485Right-handed alpha
Helix 33
AD6
F
503 508Right-handed alpha
Helix 34
AD7
F
513 532Right-handed alpha
Helix 35
AD8
F
538 542Right-handed 310
Helix 36
AD9
F
547 559Right-handed alpha
Helix 37
AE1
F
560 564Right-handed 310
Helix 38
AE2
F
565 570Right-handed alpha
Helix 39
AE3
F
581 588Right-handed alpha
Helix 40
AE4
F
588 599Right-handed alpha
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There are 4 sheets in PDB entry 7V8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
394 403anti-parallel
Strand 3
A
507 516anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 379anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
132 133first strand
Strand 2
F
141 142anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
347 350first strand
Strand 2
F
356 359anti-parallel
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