Analysis of interatomic Contacts of Structural Units in PDB entry:
7V8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V8E entry

There are 4 chains in PDB entry 7V8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 36SER 271
C
 PHE 52SER 132
A
 GLY 36SER 271
D
 ASP 54LEU 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7V8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
36 50Right-handed alpha
Helix 2
AA2
B
57 71Right-handed alpha
Helix 3
AA3
B
227 233Right-handed 310
Helix 4
AA4
B
247 259Right-handed alpha
Helix 5
AA5
C
80 93Right-handed alpha
Helix 6
AA6
C
95 97Right-handed 310
Helix 7
AA7
C
114 118Right-handed 310
Helix 8
AA8
A
37 51Right-handed alpha
Helix 9
AA9
A
57 71Right-handed alpha
Helix 10
AB1
A
227 233Right-handed 310
Helix 11
AB2
A
247 259Right-handed alpha
Helix 12
AB3
D
80 93Right-handed alpha
Helix 13
AB4
D
95 99Right-handed 310
Helix 14
AB5
D
114 118Right-handed 310
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There are 4 sheets in PDB entry 7V8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
95 97parallel
Strand 3
B
115 117parallel
Strand 4
B
135 137parallel
Strand 5
B
155 157parallel
Strand 6
B
175 177parallel
Strand 7
B
195 197parallel
Strand 8
B
215 217parallel
Strand 9
B
238 240parallel
Strand 10
B
267 269parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 75first strand
Strand 2
C
55 62anti-parallel
Strand 3
C
124 130parallel
Strand 4
C
99 102anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
95 97parallel
Strand 3
A
115 117parallel
Strand 4
A
135 137parallel
Strand 5
A
155 157parallel
Strand 6
A
175 177parallel
Strand 7
A
195 197parallel
Strand 8
A
215 217parallel
Strand 9
A
238 240parallel
Strand 10
A
267 269parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 75first strand
Strand 2
D
55 62anti-parallel
Strand 3
D
124 129parallel
Strand 4
D
100 102anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il