Analysis of interatomic Contacts of Structural Units in PDB entry:
7V8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V8I entry

There are 4 chains in PDB entry 7V8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 TYR 2ARG 397
D
 ASN 2MET 230
E
 SER 6SER 412
F
 ASN 2MET 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 7V8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
7 16Right-handed alpha
Helix 2
AA2
C
22 28Right-handed alpha
Helix 3
AA3
C
28 59Right-handed alpha
Helix 4
AA4
C
76 80Right-handed 310
Helix 5
AA5
C
148 155Right-handed alpha
Helix 6
AA6
C
195 198Right-handed 310
Helix 7
AA7
C
205 212Right-handed alpha
Helix 8
AA8
C
233 237Right-handed 310
Helix 9
AA9
C
254 293Right-handed alpha
Helix 10
AB1
C
293 303Right-handed alpha
Helix 11
AB2
C
306 335Right-handed alpha
Helix 12
AB3
C
340 344Right-handed 310
Helix 13
AB4
C
361 379Right-handed alpha
Helix 14
AB5
C
381 390Right-handed alpha
Helix 15
AB6
D
48 56Right-handed alpha
Helix 16
AB7
D
77 88Right-handed alpha
Helix 17
AB8
D
103 115Right-handed alpha
Helix 18
AB9
D
118 134Right-handed alpha
Helix 19
AC1
D
142 146Right-handed 310
Helix 20
AC2
D
147 161Right-handed alpha
Helix 21
AC3
D
177 195Right-handed alpha
Helix 22
AC4
D
205 211Right-handed alpha
Helix 23
AC5
E
11 17Right-handed alpha
Helix 24
AC6
E
27 60Right-handed alpha
Helix 25
AC7
E
77 87Right-handed alpha
Helix 26
AC8
E
122 127Right-handed alpha
Helix 27
AC9
E
128 133Right-handed alpha
Helix 28
AD1
E
137 142Right-handed 310
Helix 29
AD2
E
151 159Right-handed alpha
Helix 30
AD3
E
197 201Right-handed 310
Helix 31
AD4
E
207 215Right-handed alpha
Helix 32
AD5
E
233 243Right-handed alpha
Helix 33
AD6
E
258 294Right-handed alpha
Helix 34
AD7
E
296 305Right-handed alpha
Helix 35
AD8
E
313 344Right-handed alpha
Helix 36
AD9
E
348 353Right-handed alpha
Helix 37
AE1
E
354 356Right-handed 310
Helix 38
AE2
E
376 405Right-handed alpha
Helix 39
AE3
E
406 410Right-handed 310
Helix 40
AE4
F
48 56Right-handed alpha
Helix 41
AE5
F
77 88Right-handed alpha
Helix 42
AE6
F
103 115Right-handed alpha
Helix 43
AE7
F
118 134Right-handed alpha
Helix 44
AE8
F
142 146Right-handed 310
Helix 45
AE9
F
147 162Right-handed alpha
Helix 46
AF1
F
177 194Right-handed alpha
Helix 47
AF2
F
205 211Right-handed alpha
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There are 9 sheets in PDB entry 7V8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 185first strand
Strand 2
C
161 173anti-parallel
Strand 3
C
90 104anti-parallel
Strand 4
C
109 117anti-parallel
Strand 5
C
200 204parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 185first strand
Strand 2
C
161 173anti-parallel
Strand 3
C
90 104anti-parallel
Strand 4
C
221 226anti-parallel
Strand 5
C
66 69anti-parallel
Strand 6
C
245 248anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 130first strand
Strand 2
C
189 190anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 32first strand
Strand 2
D
6 13anti-parallel
Strand 3
D
63 68anti-parallel
Strand 4
D
71 72anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 92first strand
Strand 2
D
166 170parallel
Strand 3
D
198 202parallel
Strand 4
D
38 41parallel
Strand 5
D
214 219parallel
Strand 6
D
222 227anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
109 117first strand
Strand 2
E
91 106anti-parallel
Strand 3
E
223 228anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
165 169first strand
Strand 2
E
184 188anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
22 32first strand
Strand 2
F
6 15anti-parallel
Strand 3
F
63 68anti-parallel
Strand 4
F
71 72anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
89 92first strand
Strand 2
F
166 170parallel
Strand 3
F
198 202parallel
Strand 4
F
37 41parallel
Strand 5
F
214 219parallel
Strand 6
F
222 226anti-parallel
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