Analysis of interatomic Contacts of Structural Units in PDB entry:
7V8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V8L entry

There are 5 chains in PDB entry 7V8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 PRO 4SER 412
A
 SER 21THR 34
C
 TYR 2ARG 397
D
 ASN 2MET 230
F
 ASN 2MET 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 7V8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
5 7Right-handed 310
Helix 2
AA2
E
8 16Right-handed alpha
Helix 3
AA3
E
24 59Right-handed alpha
Helix 4
AA4
E
77 87Right-handed alpha
Helix 5
AA5
E
119 127Right-handed alpha
Helix 6
AA6
E
128 133Right-handed 310
Helix 7
AA7
E
152 158Right-handed alpha
Helix 8
AA8
E
176 180Right-handed 310
Helix 9
AA9
E
198 202Right-handed 310
Helix 10
AB1
E
207 216Right-handed alpha
Helix 11
AB2
E
233 245Right-handed alpha
Helix 12
AB3
E
254 298Right-handed alpha
Helix 13
AB4
E
298 307Right-handed alpha
Helix 14
AB5
E
313 341Right-handed alpha
Helix 15
AB6
E
344 356Right-handed alpha
Helix 16
AB7
E
376 404Right-handed alpha
Helix 17
AB8
E
406 412Right-handed alpha
Helix 18
AB9
C
4 14Right-handed alpha
Helix 19
AC1
C
22 28Right-handed alpha
Helix 20
AC2
C
28 59Right-handed alpha
Helix 21
AC3
C
60 63Right-handed 310
Helix 22
AC4
C
81 85Right-handed 310
Helix 23
AC5
C
125 127Right-handed 310
Helix 24
AC6
C
133 137Right-handed 310
Helix 25
AC7
C
148 155Right-handed alpha
Helix 26
AC8
C
194 198Right-handed 310
Helix 27
AC9
C
205 212Right-handed alpha
Helix 28
AD1
C
228 230Right-handed 310
Helix 29
AD2
C
231 236Right-handed alpha
Helix 30
AD3
C
249 271Right-handed alpha
Helix 31
AD4
C
271 303Right-handed alpha
Helix 32
AD5
C
306 337Right-handed alpha
Helix 33
AD6
C
339 344Right-handed alpha
Helix 34
AD7
C
361 390Right-handed alpha
Helix 35
AD8
C
391 397Right-handed alpha
Helix 36
AD9
D
48 56Right-handed alpha
Helix 37
AE1
D
77 88Right-handed alpha
Helix 38
AE2
D
103 115Right-handed alpha
Helix 39
AE3
D
118 134Right-handed alpha
Helix 40
AE4
D
142 146Right-handed 310
Helix 41
AE5
D
147 160Right-handed alpha
Helix 42
AE6
D
177 194Right-handed alpha
Helix 43
AE7
D
205 211Right-handed alpha
Helix 44
AE8
F
48 56Right-handed alpha
Helix 45
AE9
F
77 88Right-handed alpha
Helix 46
AF1
F
103 115Right-handed alpha
Helix 47
AF2
F
118 134Right-handed alpha
Helix 48
AF3
F
135 138Right-handed 310
Helix 49
AF4
F
147 160Right-handed alpha
Helix 50
AF5
F
177 194Right-handed alpha
Helix 51
AF6
F
205 210Right-handed alpha
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There are 7 sheets in PDB entry 7V8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
250 253first strand
Strand 2
E
66 69anti-parallel
Strand 3
E
223 228anti-parallel
Strand 4
E
91 106anti-parallel
Strand 5
E
165 170anti-parallel
Strand 6
E
183 193anti-parallel
Strand 7
E
147 151parallel
Strand 8
E
204 206anti-parallel
Strand 9
E
109 117parallel
Strand 10
E
91 106anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 130first strand
Strand 2
C
176 190anti-parallel
Strand 3
C
143 147parallel
Strand 4
C
200 204anti-parallel
Strand 5
C
109 117parallel
Strand 6
C
90 104anti-parallel
Strand 7
C
221 226anti-parallel
Strand 8
C
66 70anti-parallel
Strand 9
C
244 248anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 130first strand
Strand 2
C
176 190anti-parallel
Strand 3
C
161 173anti-parallel
Strand 4
C
90 104anti-parallel
Strand 5
C
221 226anti-parallel
Strand 6
C
66 70anti-parallel
Strand 7
C
244 248anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
7 12first strand
Strand 2
D
63 68anti-parallel
Strand 3
D
71 72anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 91first strand
Strand 2
D
166 170parallel
Strand 3
D
198 202parallel
Strand 4
D
39 41parallel
Strand 5
D
214 219parallel
Strand 6
D
222 228anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 12first strand
Strand 2
F
63 68anti-parallel
Strand 3
F
71 72anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
89 92first strand
Strand 2
F
166 170parallel
Strand 3
F
198 202parallel
Strand 4
F
38 41parallel
Strand 5
F
214 217parallel
Strand 6
F
226 228anti-parallel
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