Analysis of interatomic Contacts of Structural Units in PDB entry:
7V8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V8M entry

There are 4 chains in PDB entry 7V8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 TYR 2ARG 397
D
 ASN 2MET 230
E
 PRO 4SER 412
F
 ASN 2MET 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 7V8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
4 15Right-handed alpha
Helix 2
AA2
C
22 59Right-handed alpha
Helix 3
AA3
C
60 63Right-handed 310
Helix 4
AA4
C
81 85Right-handed 310
Helix 5
AA5
C
125 127Right-handed 310
Helix 6
AA6
C
133 137Right-handed 310
Helix 7
AA7
C
148 155Right-handed alpha
Helix 8
AA8
C
195 199Right-handed alpha
Helix 9
AA9
C
205 212Right-handed alpha
Helix 10
AB1
C
228 230Right-handed 310
Helix 11
AB2
C
231 237Right-handed alpha
Helix 12
AB3
C
249 271Right-handed alpha
Helix 13
AB4
C
271 303Right-handed alpha
Helix 14
AB5
C
306 337Right-handed alpha
Helix 15
AB6
C
339 344Right-handed alpha
Helix 16
AB7
C
361 390Right-handed alpha
Helix 17
AB8
C
391 397Right-handed alpha
Helix 18
AB9
D
48 55Right-handed alpha
Helix 19
AC1
D
77 88Right-handed alpha
Helix 20
AC2
D
103 115Right-handed alpha
Helix 21
AC3
D
118 134Right-handed alpha
Helix 22
AC4
D
142 146Right-handed 310
Helix 23
AC5
D
147 161Right-handed alpha
Helix 24
AC6
D
177 195Right-handed alpha
Helix 25
AC7
D
205 211Right-handed alpha
Helix 26
AC8
E
7 16Right-handed alpha
Helix 27
AC9
E
23 59Right-handed alpha
Helix 28
AD1
E
77 86Right-handed alpha
Helix 29
AD2
E
119 127Right-handed alpha
Helix 30
AD3
E
128 133Right-handed 310
Helix 31
AD4
E
152 159Right-handed alpha
Helix 32
AD5
E
176 180Right-handed 310
Helix 33
AD6
E
198 202Right-handed 310
Helix 34
AD7
E
208 216Right-handed alpha
Helix 35
AD8
E
233 245Right-handed alpha
Helix 36
AD9
E
254 298Right-handed alpha
Helix 37
AE1
E
298 308Right-handed alpha
Helix 38
AE2
E
313 341Right-handed alpha
Helix 39
AE3
E
344 356Right-handed alpha
Helix 40
AE4
E
376 404Right-handed alpha
Helix 41
AE5
E
406 412Right-handed alpha
Helix 42
AE6
F
48 55Right-handed alpha
Helix 43
AE7
F
77 88Right-handed alpha
Helix 44
AE8
F
103 115Right-handed alpha
Helix 45
AE9
F
118 134Right-handed alpha
Helix 46
AF1
F
142 146Right-handed 310
Helix 47
AF2
F
147 161Right-handed alpha
Helix 48
AF3
F
177 195Right-handed alpha
Helix 49
AF4
F
205 210Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 7V8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 130first strand
Strand 2
C
176 190anti-parallel
Strand 3
C
143 147parallel
Strand 4
C
200 204anti-parallel
Strand 5
C
109 117parallel
Strand 6
C
90 104anti-parallel
Strand 7
C
221 226anti-parallel
Strand 8
C
66 70anti-parallel
Strand 9
C
244 248anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 130first strand
Strand 2
C
176 190anti-parallel
Strand 3
C
161 173anti-parallel
Strand 4
C
90 104anti-parallel
Strand 5
C
221 226anti-parallel
Strand 6
C
66 70anti-parallel
Strand 7
C
244 248anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 30first strand
Strand 2
D
6 13anti-parallel
Strand 3
D
63 68anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 92first strand
Strand 2
D
166 170parallel
Strand 3
D
198 203parallel
Strand 4
D
38 41parallel
Strand 5
D
214 219parallel
Strand 6
D
222 228anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
249 253first strand
Strand 2
E
66 70anti-parallel
Strand 3
E
223 228anti-parallel
Strand 4
E
91 106anti-parallel
Strand 5
E
165 170anti-parallel
Strand 6
E
183 193anti-parallel
Strand 7
E
147 151parallel
Strand 8
E
204 207anti-parallel
Strand 9
E
109 118parallel
Strand 10
E
91 106anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 12first strand
Strand 2
F
63 68anti-parallel
Strand 3
F
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
89 92first strand
Strand 2
F
166 170parallel
Strand 3
F
198 203parallel
Strand 4
F
38 41parallel
Strand 5
F
214 219parallel
Strand 6
F
222 227anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il