Analysis of interatomic Contacts of Structural Units in PDB entry:
7V8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V8N entry

There are 2 chains in PDB entry 7V8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 168VAL 417
B
 SER 168PRO 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7V8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
168 174Right-handed alpha
Helix 2
AA2
A
197 201Right-handed 310
Helix 3
AA3
A
238 244Right-handed alpha
Helix 4
AA4
A
245 258Right-handed alpha
Helix 5
AA5
A
261 265Right-handed 310
Helix 6
AA6
A
267 272Right-handed alpha
Helix 7
AA7
A
308 327Right-handed alpha
Helix 8
AA8
A
342 353Right-handed alpha
Helix 9
AA9
A
354 359Right-handed 310
Helix 10
AB1
A
361 372Right-handed alpha
Helix 11
AB2
A
380 393Right-handed alpha
Helix 12
AB3
A
393 404Right-handed alpha
Helix 13
AB4
B
169 175Right-handed alpha
Helix 14
AB5
B
197 201Right-handed 310
Helix 15
AB6
B
227 229Right-handed 310
Helix 16
AB7
B
233 237Right-handed 310
Helix 17
AB8
B
248 258Right-handed alpha
Helix 18
AB9
B
261 265Right-handed 310
Helix 19
AC1
B
267 271Right-handed 310
Helix 20
AC2
B
308 326Right-handed alpha
Helix 21
AC3
B
342 353Right-handed alpha
Helix 22
AC4
B
354 359Right-handed 310
Helix 23
AC5
B
361 372Right-handed alpha
Helix 24
AC6
B
380 393Right-handed alpha
Helix 25
AC7
B
393 404Right-handed alpha
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There are 3 sheets in PDB entry 7V8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 225first strand
Strand 2
A
210 215anti-parallel
Strand 3
A
190 196anti-parallel
Strand 4
A
178 182anti-parallel
Strand 5
A
229 231anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 182first strand
Strand 2
B
190 196anti-parallel
Strand 3
B
210 215anti-parallel
Strand 4
B
221 225anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 336first strand
Strand 2
B
339 340anti-parallel
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