Analysis of interatomic Contacts of Structural Units in PDB entry:
7V8S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V8S entry

There are 2 chains in PDB entry 7V8S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	GLY 534
B	THR 6	GLY 534

There are 52 helices in PDB entry 7V8S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	30	Right-handed alpha
Helix 2	AA2	A	46	51	Right-handed alpha
Helix 3	AA3	A	61	65	Right-handed 310
Helix 4	AA4	A	70	77	Right-handed alpha
Helix 5	AA5	A	85	100	Right-handed alpha
Helix 6	AA6	A	102	104	Right-handed 310
Helix 7	AA7	A	156	160	Right-handed 310
Helix 8	AA8	A	168	170	Right-handed 310
Helix 9	AA9	A	187	199	Right-handed alpha
Helix 10	AB1	A	223	233	Right-handed alpha
Helix 11	AB2	A	233	244	Right-handed alpha
Helix 12	AB3	A	256	260	Right-handed 310
Helix 13	AB4	A	261	276	Right-handed alpha
Helix 14	AB5	A	277	284	Right-handed alpha
Helix 15	AB6	A	292	311	Right-handed alpha
Helix 16	AB7	A	313	321	Right-handed alpha
Helix 17	AB8	A	335	340	Right-handed alpha
Helix 18	AB9	A	386	391	Right-handed alpha
Helix 19	AC1	A	396	400	Right-handed 310
Helix 20	AC2	A	401	406	Right-handed alpha
Helix 21	AC3	A	436	459	Right-handed alpha
Helix 22	AC4	A	466	482	Right-handed alpha
Helix 23	AC5	A	483	484	Right-handed 310
Helix 24	AC6	A	485	489	Right-handed 310
Helix 25	AC7	A	491	495	Right-handed 310
Helix 26	AC8	A	511	525	Right-handed alpha
Helix 27	AC9	B	17	30	Right-handed alpha
Helix 28	AD1	B	46	51	Right-handed alpha
Helix 29	AD2	B	61	65	Right-handed 310
Helix 30	AD3	B	70	77	Right-handed alpha
Helix 31	AD4	B	85	100	Right-handed alpha
Helix 32	AD5	B	102	104	Right-handed 310
Helix 33	AD6	B	156	160	Right-handed 310
Helix 34	AD7	B	168	170	Right-handed 310
Helix 35	AD8	B	187	198	Right-handed alpha
Helix 36	AD9	B	223	233	Right-handed alpha
Helix 37	AE1	B	233	244	Right-handed alpha
Helix 38	AE2	B	256	260	Right-handed 310
Helix 39	AE3	B	261	276	Right-handed alpha
Helix 40	AE4	B	277	284	Right-handed alpha
Helix 41	AE5	B	292	311	Right-handed alpha
Helix 42	AE6	B	313	321	Right-handed alpha
Helix 43	AE7	B	335	340	Right-handed alpha
Helix 44	AE8	B	386	391	Right-handed alpha
Helix 45	AE9	B	396	400	Right-handed 310
Helix 46	AF1	B	401	406	Right-handed alpha
Helix 47	AF2	B	436	458	Right-handed alpha
Helix 48	AF3	B	466	482	Right-handed alpha
Helix 49	AF4	B	483	484	Right-handed 310
Helix 50	AF5	B	485	489	Right-handed 310
Helix 51	AF6	B	491	495	Right-handed 310
Helix 52	AF7	B	510	525	Right-handed alpha

There are 13 sheets in PDB entry 7V8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	35	38	parallel
Strand 3	A	9	14	parallel
Strand 4	A	133	141	parallel
Strand 5	A	123	128	anti-parallel
Strand 6	A	112	118	anti-parallel
Strand 7	A	393	395	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	35	38	parallel
Strand 3	A	9	14	parallel
Strand 4	A	133	141	parallel
Strand 5	A	424	426	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	166	first strand
Strand 2	A	375	378	parallel
Strand 3	A	180	184	parallel
Strand 4	A	203	208	parallel
Strand 5	A	345	349	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	332	333	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	355	359	first strand
Strand 2	A	362	365	anti-parallel
Strand 3	A	370	372	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	465	first strand
Strand 2	A	530	533	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	35	38	parallel
Strand 3	B	9	14	parallel
Strand 4	B	133	141	parallel
Strand 5	B	123	128	anti-parallel
Strand 6	B	112	118	anti-parallel
Strand 7	B	393	395	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	35	38	parallel
Strand 3	B	9	14	parallel
Strand 4	B	133	141	parallel
Strand 5	B	424	426	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	375	378	parallel
Strand 3	B	180	184	parallel
Strand 4	B	203	208	parallel
Strand 5	B	345	349	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	216	first strand
Strand 2	B	332	333	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	355	359	first strand
Strand 2	B	362	365	anti-parallel
Strand 3	B	370	372	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	433	first strand
Strand 2	B	507	508	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	465	first strand
Strand 2	B	530	533	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V8S

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V8S