Analysis of interatomic Contacts of Structural Units in PDB entry:
7V94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V94 entry

There are 4 chains in PDB entry 7V94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLU 1217
B
 U 2 U 110
C
 A 1 T 23
D
 A 3 G 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 7V94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
15 28Right-handed alpha
Helix 3
AA3
A
46 53Right-handed alpha
Helix 4
AA4
A
55 67Right-handed alpha
Helix 5
AA5
A
73 83Right-handed alpha
Helix 6
AA6
A
90 99Right-handed alpha
Helix 7
AA7
A
99 104Right-handed alpha
Helix 8
AA8
A
104 117Right-handed alpha
Helix 9
AA9
A
124 132Right-handed alpha
Helix 10
AB1
A
152 166Right-handed alpha
Helix 11
AB2
A
174 192Right-handed alpha
Helix 12
AB3
A
194 201Right-handed alpha
Helix 13
AB4
A
201 216Right-handed alpha
Helix 14
AB5
A
222 231Right-handed alpha
Helix 15
AB6
A
253 266Right-handed alpha
Helix 16
AB7
A
273 286Right-handed alpha
Helix 17
AB8
A
287 289Right-handed 310
Helix 18
AB9
A
290 298Right-handed alpha
Helix 19
AC1
A
298 306Right-handed alpha
Helix 20
AC2
A
308 315Right-handed alpha
Helix 21
AC3
A
319 321Right-handed 310
Helix 22
AC4
A
322 336Right-handed alpha
Helix 23
AC5
A
347 349Right-handed 310
Helix 24
AC6
A
350 377Right-handed alpha
Helix 25
AC7
A
388 392Right-handed 310
Helix 26
AC8
A
393 397Right-handed 310
Helix 27
AC9
A
402 428Right-handed alpha
Helix 28
AD1
A
434 470Right-handed alpha
Helix 29
AD2
A
472 481Right-handed alpha
Helix 30
AD3
A
505 538Right-handed alpha
Helix 31
AD4
A
546 548Right-handed 310
Helix 32
AD5
A
549 557Right-handed alpha
Helix 33
AD6
A
568 585Right-handed alpha
Helix 34
AD7
A
587 602Right-handed alpha
Helix 35
AD8
A
606 617Right-handed alpha
Helix 36
AD9
A
637 644Right-handed alpha
Helix 37
AE1
A
645 657Right-handed alpha
Helix 38
AE2
A
662 682Right-handed alpha
Helix 39
AE3
A
703 711Right-handed alpha
Helix 40
AE4
A
716 739Right-handed alpha
Helix 41
AE5
A
769 773Right-handed 310
Helix 42
AE6
A
777 786Right-handed alpha
Helix 43
AE7
A
790 802Right-handed alpha
Helix 44
AE8
A
805 813Right-handed alpha
Helix 45
AE9
A
853 866Right-handed alpha
Helix 46
AF1
A
954 964Right-handed alpha
Helix 47
AF2
A
965 968Right-handed 310
Helix 48
AF3
A
970 974Right-handed 310
Helix 49
AF4
A
976 981Right-handed alpha
Helix 50
AF5
A
984 1008Right-handed alpha
Helix 51
AF6
A
1022 1030Right-handed alpha
Helix 52
AF7
A
1031 1036Right-handed 310
Helix 53
AF8
A
1041 1052Right-handed alpha
Helix 54
AF9
A
1200 1215Right-handed alpha
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There are 6 sheets in PDB entry 7V94. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
1055 1064anti-parallel
Strand 3
A
1071 1074anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 42first strand
Strand 2
A
901 908anti-parallel
Strand 3
A
874 885anti-parallel
Strand 4
A
868 870first strand
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 750first strand
Strand 2
A
874 885anti-parallel
Strand 3
A
901 908anti-parallel
Strand 4
A
891 895first strand
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
241 243anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
756 761first strand
Strand 2
A
815 819anti-parallel
Strand 3
A
843 849anti-parallel
Strand 4
A
826 834anti-parallel
Strand 5
A
756 761anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
946 953first strand
Strand 2
A
933 940anti-parallel
Strand 3
A
923 929anti-parallel
Strand 4
A
1010 1013parallel
Strand 5
A
1078 1079parallel
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