Analysis of interatomic Contacts of Structural Units in PDB entry:
7V96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V96 entry

There are 18 chains in PDB entry 7V96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	G 1	T 275
J	A 1	C 275
A	VAL 35	ARG 134
B	ARG 19	GLY 102
C	ALA 10	LYS 118
D	LYS 24	LYS 122
E	LYS 36	ALA 135
F	LYS 16	GLY 102
G	ALA 10	LYS 129
H	LYS 24	ALA 121
K	LYS 36	ARG 134
L	LYS 16	GLY 102
M	ARG 11	LYS 129
N	LYS 24	LYS 122
O	LYS 36	ALA 135
P	ARG 19	GLY 102
Q	ALA 10	LYS 119
R	LYS 24	ALA 121

There are 77 helices in PDB entry 7V96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	68	Right-handed 310
Helix 2	AA2	A	69	74	Right-handed alpha
Helix 3	AA3	A	92	96	Right-handed 310
Helix 4	AA4	A	99	103	Right-handed 310
Helix 5	AA5	A	120	132	Right-handed alpha
Helix 6	AA6	B	21	27	Right-handed alpha
Helix 7	AA7	B	31	35	Right-handed 310
Helix 8	AA8	B	49	57	Right-handed alpha
Helix 9	AA9	B	61	66	Right-handed alpha
Helix 10	AB1	B	69	76	Right-handed alpha
Helix 11	AB2	B	82	93	Right-handed alpha
Helix 12	AB3	C	16	22	Right-handed alpha
Helix 13	AB4	C	28	37	Right-handed alpha
Helix 14	AB5	C	45	74	Right-handed alpha
Helix 15	AB6	C	79	88	Right-handed alpha
Helix 16	AB7	C	90	97	Right-handed alpha
Helix 17	AB8	D	34	46	Right-handed alpha
Helix 18	AB9	D	52	82	Right-handed alpha
Helix 19	AC1	D	89	99	Right-handed alpha
Helix 20	AC2	D	101	121	Right-handed alpha
Helix 21	AC3	E	45	55	Right-handed alpha
Helix 22	AC4	E	63	79	Right-handed alpha
Helix 23	AC5	E	85	114	Right-handed alpha
Helix 24	AC6	E	120	132	Right-handed alpha
Helix 25	AC7	F	23	28	Right-handed 310
Helix 26	AC8	F	32	36	Right-handed 310
Helix 27	AC9	F	49	76	Right-handed alpha
Helix 28	AD1	F	82	94	Right-handed alpha
Helix 29	AD2	G	16	22	Right-handed alpha
Helix 30	AD3	G	31	36	Right-handed alpha
Helix 31	AD4	G	46	61	Right-handed alpha
Helix 32	AD5	G	64	72	Right-handed alpha
Helix 33	AD6	G	79	88	Right-handed alpha
Helix 34	AD7	G	112	116	Right-handed 310
Helix 35	AD8	H	35	46	Right-handed alpha
Helix 36	AD9	H	52	81	Right-handed alpha
Helix 37	AE1	H	87	99	Right-handed alpha
Helix 38	AE2	H	101	120	Right-handed alpha
Helix 39	AE3	K	45	56	Right-handed alpha
Helix 40	AE4	K	63	79	Right-handed alpha
Helix 41	AE5	K	85	114	Right-handed alpha
Helix 42	AE6	K	120	131	Right-handed alpha
Helix 43	AE7	L	30	42	Right-handed alpha
Helix 44	AE8	L	49	77	Right-handed alpha
Helix 45	AE9	L	82	94	Right-handed alpha
Helix 46	AF1	M	16	21	Right-handed alpha
Helix 47	AF2	M	28	36	Right-handed alpha
Helix 48	AF3	M	46	51	Right-handed alpha
Helix 49	AF4	M	55	66	Right-handed alpha
Helix 50	AF5	M	67	72	Right-handed alpha
Helix 51	AF6	M	79	88	Right-handed alpha
Helix 52	AF7	M	112	116	Right-handed 310
Helix 53	AF8	N	41	46	Right-handed alpha
Helix 54	AF9	N	52	64	Right-handed alpha
Helix 55	AG1	N	76	81	Right-handed alpha
Helix 56	AG2	N	87	99	Right-handed alpha
Helix 57	AG3	N	104	121	Right-handed alpha
Helix 58	AG4	O	49	55	Right-handed alpha
Helix 59	AG5	O	64	68	Right-handed 310
Helix 60	AG6	O	70	74	Right-handed 310
Helix 61	AG7	O	99	112	Right-handed alpha
Helix 62	AG8	O	120	132	Right-handed alpha
Helix 63	AG9	P	23	28	Right-handed alpha
Helix 64	AH1	P	31	34	Right-handed 310
Helix 65	AH2	P	35	40	Right-handed alpha
Helix 66	AH3	P	49	76	Right-handed alpha
Helix 67	AH4	P	82	93	Right-handed alpha
Helix 68	AH5	Q	16	22	Right-handed alpha
Helix 69	AH6	Q	28	37	Right-handed alpha
Helix 70	AH7	Q	45	74	Right-handed alpha
Helix 71	AH8	Q	79	88	Right-handed alpha
Helix 72	AH9	Q	91	95	Right-handed 310
Helix 73	AI1	R	34	46	Right-handed alpha
Helix 74	AI2	R	52	64	Right-handed alpha
Helix 75	AI3	R	68	82	Right-handed alpha
Helix 76	AI4	R	87	92	Right-handed 310
Helix 77	AI5	R	101	121	Right-handed alpha

There are 13 sheets in PDB entry 7V96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	83	84	first strand
Strand 2	L	80	81	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	97	98	first strand
Strand 2	Q	101	102	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	101	102	first strand
Strand 2	P	97	98	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	83	84	first strand
Strand 2	P	80	81	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	118	119	first strand
Strand 2	P	45	46	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	77	78	first strand
Strand 2	R	50	51	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V96

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V96