Analysis of interatomic Contacts of Structural Units in PDB entry:
7V98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V98 entry

There are 2 chains in PDB entry 7V98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 115ALA 533
B
 THR 114ALA 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 7V98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 133Right-handed alpha
Helix 2
AA2
A
136 159Right-handed alpha
Helix 3
AA3
A
164 175Right-handed alpha
Helix 4
AA4
A
179 194Right-handed alpha
Helix 5
AA5
A
225 229Right-handed 310
Helix 6
AA6
A
253 267Right-handed alpha
Helix 7
AA7
A
279 294Right-handed alpha
Helix 8
AA8
A
305 321Right-handed alpha
Helix 9
AA9
A
333 337Right-handed 310
Helix 10
AB1
A
338 342Right-handed 310
Helix 11
AB2
A
363 380Right-handed alpha
Helix 12
AB3
A
383 399Right-handed alpha
Helix 13
AB4
A
410 435Right-handed alpha
Helix 14
AB5
A
439 454Right-handed 310
Helix 15
AB6
A
458 479Right-handed alpha
Helix 16
AB7
A
522 533Right-handed alpha
Helix 17
AB8
B
115 132Right-handed alpha
Helix 18
AB9
B
136 159Right-handed alpha
Helix 19
AC1
B
164 176Right-handed alpha
Helix 20
AC2
B
180 194Right-handed alpha
Helix 21
AC3
B
225 229Right-handed 310
Helix 22
AC4
B
257 267Right-handed alpha
Helix 23
AC5
B
279 294Right-handed alpha
Helix 24
AC6
B
305 321Right-handed alpha
Helix 25
AC7
B
333 337Right-handed 310
Helix 26
AC8
B
338 342Right-handed 310
Helix 27
AC9
B
363 379Right-handed alpha
Helix 28
AD1
B
383 399Right-handed alpha
Helix 29
AD2
B
410 435Right-handed alpha
Helix 30
AD3
B
441 447Right-handed alpha
Helix 31
AD4
B
448 454Right-handed 310
Helix 32
AD5
B
458 472Right-handed alpha
Helix 33
AD6
B
473 479Right-handed alpha
Helix 34
AD7
B
522 533Right-handed alpha
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There are 8 sheets in PDB entry 7V98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
401 406parallel
Strand 3
A
210 214anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
343 350anti-parallel
Strand 4
A
237 247anti-parallel
Strand 5
A
271 275parallel
Strand 6
A
297 301parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
355 360anti-parallel
Strand 3
A
343 350anti-parallel
Strand 4
A
237 247anti-parallel
Strand 5
A
324 325parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
A
520 521anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 203first strand
Strand 2
B
401 406parallel
Strand 3
B
210 214anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 219first strand
Strand 2
B
355 360anti-parallel
Strand 3
B
343 350anti-parallel
Strand 4
B
237 247anti-parallel
Strand 5
B
271 275parallel
Strand 6
B
297 301parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 219first strand
Strand 2
B
355 360anti-parallel
Strand 3
B
343 350anti-parallel
Strand 4
B
237 247anti-parallel
Strand 5
B
324 325parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
436 438first strand
Strand 2
B
519 521anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il