Analysis of interatomic Contacts of Structural Units in PDB entry:
7V9A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V9A entry

There are 10 chains in PDB entry 7V9A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 145	GLY 521
C	GLU 29	GLU 421
D	GLY 45	PRO 161
E	ARG 22	PRO 150
F	MET 1	PRO 62
G	LEU 47	GLN 395
H	GLN 64	PRO 161
I	SER 19	PRO 152
J	MET 1	LEU 64
R	G 1	C 451

There are 45 helices in PDB entry 7V9A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	200	206	Right-handed alpha
Helix 2	AA2	B	490	498	Right-handed alpha
Helix 3	AA3	C	53	57	Right-handed 310
Helix 4	AA4	C	82	89	Right-handed alpha
Helix 5	AA5	C	101	114	Right-handed alpha
Helix 6	AA6	C	139	141	Right-handed 310
Helix 7	AA7	C	142	148	Right-handed alpha
Helix 8	AA8	C	165	176	Right-handed alpha
Helix 9	AA9	C	225	238	Right-handed alpha
Helix 10	AB1	C	262	276	Right-handed alpha
Helix 11	AB2	C	279	286	Right-handed alpha
Helix 12	AB3	C	288	295	Right-handed 310
Helix 13	AB4	C	305	312	Right-handed alpha
Helix 14	AB5	C	351	356	Right-handed alpha
Helix 15	AB6	C	385	396	Right-handed alpha
Helix 16	AB7	C	409	414	Right-handed alpha
Helix 17	AB8	E	23	30	Right-handed alpha
Helix 18	AB9	E	42	58	Right-handed alpha
Helix 19	AC1	E	63	74	Right-handed alpha
Helix 20	AC2	E	93	101	Right-handed alpha
Helix 21	AC3	E	111	120	Right-handed alpha
Helix 22	AC4	E	134	137	Right-handed 310
Helix 23	AC5	E	138	148	Right-handed alpha
Helix 24	AC6	F	41	53	Right-handed alpha
Helix 25	AC7	G	53	57	Right-handed 310
Helix 26	AC8	G	82	89	Right-handed alpha
Helix 27	AC9	G	101	114	Right-handed alpha
Helix 28	AD1	G	139	141	Right-handed 310
Helix 29	AD2	G	142	148	Right-handed alpha
Helix 30	AD3	G	165	176	Right-handed alpha
Helix 31	AD4	G	226	237	Right-handed alpha
Helix 32	AD5	G	263	276	Right-handed alpha
Helix 33	AD6	G	279	284	Right-handed alpha
Helix 34	AD7	G	288	292	Right-handed 310
Helix 35	AD8	G	303	312	Right-handed alpha
Helix 36	AD9	G	351	356	Right-handed alpha
Helix 37	AE1	G	385	395	Right-handed alpha
Helix 38	AE2	H	148	151	Right-handed 310
Helix 39	AE3	I	20	30	Right-handed alpha
Helix 40	AE4	I	40	56	Right-handed alpha
Helix 41	AE5	I	63	74	Right-handed alpha
Helix 42	AE6	I	93	101	Right-handed alpha
Helix 43	AE7	I	111	119	Right-handed alpha
Helix 44	AE8	I	136	147	Right-handed alpha
Helix 45	AE9	J	42	53	Right-handed alpha

There are 21 sheets in PDB entry 7V9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	160	first strand
Strand 2	B	514	518	anti-parallel
Strand 3	B	476	480	anti-parallel
Strand 4	B	464	469	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	177	first strand
Strand 2	B	183	187	anti-parallel
Strand 3	B	192	197	anti-parallel
Strand 4	B	216	221	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	244	249	anti-parallel
Strand 3	B	254	258	anti-parallel
Strand 4	B	264	268	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	291	295	anti-parallel
Strand 3	B	299	304	anti-parallel
Strand 4	B	313	316	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	333	first strand
Strand 2	B	339	344	anti-parallel
Strand 3	B	349	353	anti-parallel
Strand 4	B	361	363	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	373	first strand
Strand 2	B	381	386	anti-parallel
Strand 3	B	391	396	anti-parallel
Strand 4	B	405	408	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	421	first strand
Strand 2	B	428	430	anti-parallel
Strand 3	B	437	441	anti-parallel
Strand 4	B	452	457	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	320	323	anti-parallel
Strand 3	C	297	301	anti-parallel
Strand 4	C	331	336	parallel
Strand 5	C	342	348	anti-parallel
Strand 6	C	364	369	anti-parallel
Strand 7	C	314	315	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	95	first strand
Strand 2	C	128	135	anti-parallel
Strand 3	C	241	251	parallel
Strand 4	C	151	159	anti-parallel
Strand 5	C	213	220	anti-parallel
Strand 6	C	195	208	anti-parallel
Strand 7	C	178	182	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	128	135	anti-parallel
Strand 3	C	241	251	parallel
Strand 4	C	254	255	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	80	first strand
Strand 2	D	83	87	anti-parallel
Strand 3	D	123	129	anti-parallel
Strand 4	D	109	118	anti-parallel
Strand 5	D	101	103	anti-parallel
Strand 6	D	143	146	anti-parallel
Strand 7	D	71	80	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	151	153	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	61	first strand
Strand 2	E	127	129	anti-parallel
Strand 3	E	78	82	anti-parallel
Strand 4	E	105	108	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	16	first strand
Strand 2	F	4	7	anti-parallel
Strand 3	F	28	29	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	64	first strand
Strand 2	G	322	323	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	120	first strand
Strand 2	G	131	135	anti-parallel
Strand 3	G	91	95	anti-parallel
Strand 4	G	261	262	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	182	first strand
Strand 2	G	195	204	anti-parallel
Strand 3	G	215	220	anti-parallel
Strand 4	G	151	159	anti-parallel
Strand 5	G	241	251	anti-parallel
Strand 6	G	254	255	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	298	300	first strand
Strand 2	G	331	336	parallel
Strand 3	G	342	348	anti-parallel
Strand 4	G	364	369	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	80	first strand
Strand 2	H	83	88	anti-parallel
Strand 3	H	124	129	anti-parallel
Strand 4	H	109	116	anti-parallel
Strand 5	H	102	103	anti-parallel
Strand 6	H	143	146	anti-parallel
Strand 7	H	71	80	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	60	61	first strand
Strand 2	I	127	129	anti-parallel
Strand 3	I	78	82	anti-parallel
Strand 4	I	105	108	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	13	16	first strand
Strand 2	J	4	7	anti-parallel
Strand 3	J	28	29	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V9A

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V9A