Analysis of interatomic Contacts of Structural Units in PDB entry:
7V9L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V9L entry

There are 5 chains in PDB entry 7V9L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	LEU 394
R	PHE 62	TRP 327
Y	THR 6	GLU 63
N	GLN 1	VAL 126
B	GLU 3	SER 343

There are 27 helices in PDB entry 7V9L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	39	Right-handed alpha
Helix 2	AA2	A	52	64	Right-handed alpha
Helix 3	AA3	A	233	241	Right-handed 310
Helix 4	AA4	A	265	279	Right-handed alpha
Helix 5	AA5	A	293	304	Right-handed alpha
Helix 6	AA6	A	307	311	Right-handed 310
Helix 7	AA7	A	312	317	Right-handed 310
Helix 8	AA8	A	331	353	Right-handed alpha
Helix 9	AA9	A	369	391	Right-handed alpha
Helix 10	AB1	R	63	90	Right-handed alpha
Helix 11	AB2	R	91	94	Right-handed 310
Helix 12	AB3	R	95	125	Right-handed alpha
Helix 13	AB4	R	134	169	Right-handed alpha
Helix 14	AB5	R	174	201	Right-handed alpha
Helix 15	AB6	R	214	248	Right-handed alpha
Helix 16	AB7	R	257	275	Right-handed alpha
Helix 17	AB8	R	276	282	Right-handed 310
Helix 18	AB9	R	289	298	Right-handed alpha
Helix 19	AC1	R	298	313	Right-handed alpha
Helix 20	AC2	R	316	327	Right-handed alpha
Helix 21	AC3	Y	7	24	Right-handed alpha
Helix 22	AC4	Y	29	45	Right-handed alpha
Helix 23	AC5	Y	46	48	Right-handed 310
Helix 24	AC6	N	28	32	Right-handed 310
Helix 25	AC7	N	87	91	Right-handed 310
Helix 26	AC8	B	4	26	Right-handed alpha
Helix 27	AC9	B	29	34	Right-handed alpha

There are 10 sheets in PDB entry 7V9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	122	124	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	303	308	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V9L

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V9L