Analysis of interatomic Contacts of Structural Units in PDB entry:
7V9P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7V9P entry

There are 2 chains in PDB entry 7V9P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 3	SER 860
B	PRO 3	VAL 434

There are 73 helices in PDB entry 7V9P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	17	Right-handed alpha
Helix 2	AA2	A	30	34	Right-handed 310
Helix 3	AA3	A	135	139	Right-handed 310
Helix 4	AA4	A	191	195	Right-handed 310
Helix 5	AA5	A	225	232	Right-handed 310
Helix 6	AA6	A	233	253	Right-handed alpha
Helix 7	AA7	A	285	287	Right-handed 310
Helix 8	AA8	A	293	310	Right-handed alpha
Helix 9	AA9	A	321	323	Right-handed 310
Helix 10	AB1	A	324	344	Right-handed alpha
Helix 11	AB2	A	348	356	Right-handed alpha
Helix 12	AB3	A	356	366	Right-handed alpha
Helix 13	AB4	A	392	407	Right-handed alpha
Helix 14	AB5	A	407	423	Right-handed alpha
Helix 15	AB6	A	428	441	Right-handed alpha
Helix 16	AB7	A	443	452	Right-handed alpha
Helix 17	AB8	A	526	529	Right-handed 310
Helix 18	AB9	A	542	544	Right-handed 310
Helix 19	AC1	A	552	563	Right-handed alpha
Helix 20	AC2	A	564	566	Right-handed 310
Helix 21	AC3	A	568	585	Right-handed alpha
Helix 22	AC4	A	589	599	Right-handed alpha
Helix 23	AC5	A	605	609	Right-handed 310
Helix 24	AC6	A	611	629	Right-handed alpha
Helix 25	AC7	A	634	653	Right-handed alpha
Helix 26	AC8	A	657	669	Right-handed alpha
Helix 27	AC9	A	673	686	Right-handed alpha
Helix 28	AD1	A	696	710	Right-handed alpha
Helix 29	AD2	A	714	725	Right-handed alpha
Helix 30	AD3	A	727	741	Right-handed alpha
Helix 31	AD4	A	743	757	Right-handed alpha
Helix 32	AD5	A	761	771	Right-handed alpha
Helix 33	AD6	A	778	782	Right-handed 310
Helix 34	AD7	A	783	799	Right-handed alpha
Helix 35	AD8	A	800	812	Right-handed alpha
Helix 36	AD9	A	818	830	Right-handed alpha
Helix 37	AE1	A	834	860	Right-handed alpha
Helix 38	AE2	B	7	17	Right-handed alpha
Helix 39	AE3	B	135	139	Right-handed 310
Helix 40	AE4	B	191	195	Right-handed 310
Helix 41	AE5	B	225	232	Right-handed 310
Helix 42	AE6	B	233	253	Right-handed alpha
Helix 43	AE7	B	285	287	Right-handed 310
Helix 44	AE8	B	293	311	Right-handed alpha
Helix 45	AE9	B	321	323	Right-handed 310
Helix 46	AF1	B	324	344	Right-handed alpha
Helix 47	AF2	B	348	356	Right-handed alpha
Helix 48	AF3	B	356	366	Right-handed alpha
Helix 49	AF4	B	379	383	Right-handed 310
Helix 50	AF5	B	392	407	Right-handed alpha
Helix 51	AF6	B	407	423	Right-handed alpha
Helix 52	AF7	B	428	441	Right-handed alpha
Helix 53	AF8	B	446	452	Right-handed alpha
Helix 54	AF9	B	526	529	Right-handed 310
Helix 55	AG1	B	542	544	Right-handed 310
Helix 56	AG2	B	552	563	Right-handed alpha
Helix 57	AG3	B	564	566	Right-handed 310
Helix 58	AG4	B	568	585	Right-handed alpha
Helix 59	AG5	B	589	599	Right-handed alpha
Helix 60	AG6	B	605	609	Right-handed 310
Helix 61	AG7	B	611	629	Right-handed alpha
Helix 62	AG8	B	634	653	Right-handed alpha
Helix 63	AG9	B	657	669	Right-handed alpha
Helix 64	AH1	B	673	686	Right-handed alpha
Helix 65	AH2	B	696	710	Right-handed alpha
Helix 66	AH3	B	714	725	Right-handed alpha
Helix 67	AH4	B	727	741	Right-handed alpha
Helix 68	AH5	B	743	757	Right-handed alpha
Helix 69	AH6	B	761	771	Right-handed alpha
Helix 70	AH7	B	783	799	Right-handed alpha
Helix 71	AH8	B	800	812	Right-handed alpha
Helix 72	AH9	B	818	831	Right-handed alpha
Helix 73	AI1	B	834	860	Right-handed alpha

There are 14 sheets in PDB entry 7V9P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	A	96	106	anti-parallel
Strand 4	A	40	51	anti-parallel
Strand 5	A	18	28	anti-parallel
Strand 6	A	151	159	parallel
Strand 7	A	179	184	anti-parallel
Strand 8	A	170	174	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	88	90	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	118	first strand
Strand 2	A	125	130	anti-parallel
Strand 3	A	197	200	anti-parallel
Strand 4	A	163	166	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	209	first strand
Strand 2	A	218	224	anti-parallel
Strand 3	A	261	266	parallel
Strand 4	A	279	283	parallel
Strand 5	A	273	274	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	A	426	427	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	522	524	first strand
Strand 2	A	472	479	anti-parallel
Strand 3	A	459	466	anti-parallel
Strand 4	A	548	549	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	518	first strand
Strand 2	A	492	501	anti-parallel
Strand 3	A	536	541	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	66	72	anti-parallel
Strand 3	B	96	106	anti-parallel
Strand 4	B	40	51	anti-parallel
Strand 5	B	18	28	anti-parallel
Strand 6	B	151	159	parallel
Strand 7	B	179	184	anti-parallel
Strand 8	B	170	174	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	88	90	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	118	first strand
Strand 2	B	125	130	anti-parallel
Strand 3	B	197	200	anti-parallel
Strand 4	B	163	166	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	209	first strand
Strand 2	B	218	224	anti-parallel
Strand 3	B	261	266	parallel
Strand 4	B	279	283	parallel
Strand 5	B	273	274	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	425	427	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	522	524	first strand
Strand 2	B	472	479	anti-parallel
Strand 3	B	459	466	anti-parallel
Strand 4	B	548	549	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	518	first strand
Strand 2	B	492	501	anti-parallel
Strand 3	B	536	541	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7V9P

Analysis of interatomic Contacts of Structural Units in PDB entry:
7V9P