Analysis of interatomic Contacts of Structural Units in PDB entry:
7V9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7V9U entry

There are 8 chains in PDB entry 7V9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3GLY 311
B
 SER 3GLY 311
D
 G 1 G 85
E
 C 9 C 81
F
 C 0 G 7
C
 G 1 G 85
G
 C 8 C 81
H
 C 0 G 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7V9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 16Right-handed alpha
Helix 2
AA2
A
22 31Right-handed alpha
Helix 3
AA3
A
33 42Right-handed alpha
Helix 4
AA4
A
43 47Right-handed 310
Helix 5
AA5
A
70 83Right-handed alpha
Helix 6
AA6
A
84 87Right-handed 310
Helix 7
AA7
A
102 107Right-handed alpha
Helix 8
AA8
A
108 110Right-handed 310
Helix 9
AA9
A
129 137Right-handed alpha
Helix 10
AB1
A
138 140Right-handed 310
Helix 11
AB2
A
142 154Right-handed alpha
Helix 12
AB3
A
165 174Right-handed alpha
Helix 13
AB4
A
174 186Right-handed alpha
Helix 14
AB5
A
205 224Right-handed alpha
Helix 15
AB6
A
257 272Right-handed alpha
Helix 16
AB7
A
278 283Right-handed alpha
Helix 17
AB8
A
284 292Right-handed alpha
Helix 18
AB9
A
292 310Right-handed alpha
Helix 19
AC1
B
4 16Right-handed alpha
Helix 20
AC2
B
22 30Right-handed alpha
Helix 21
AC3
B
33 42Right-handed alpha
Helix 22
AC4
B
43 47Right-handed 310
Helix 23
AC5
B
70 84Right-handed alpha
Helix 24
AC6
B
85 87Right-handed 310
Helix 25
AC7
B
102 107Right-handed alpha
Helix 26
AC8
B
108 110Right-handed 310
Helix 27
AC9
B
129 139Right-handed alpha
Helix 28
AD1
B
142 154Right-handed alpha
Helix 29
AD2
B
165 174Right-handed alpha
Helix 30
AD3
B
174 186Right-handed alpha
Helix 31
AD4
B
205 220Right-handed alpha
Helix 32
AD5
B
221 223Right-handed 310
Helix 33
AD6
B
257 272Right-handed alpha
Helix 34
AD7
B
277 281Right-handed 310
Helix 35
AD8
B
284 292Right-handed alpha
Helix 36
AD9
B
292 310Right-handed alpha
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There are 8 sheets in PDB entry 7V9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
63 67anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
198 203anti-parallel
Strand 3
A
114 118anti-parallel
Strand 4
A
234 235anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
226 227anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
246 248anti-parallel
Strand 3
A
253 254anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 55first strand
Strand 2
B
61 67anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 195first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
114 118anti-parallel
Strand 4
B
234 235anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 121first strand
Strand 2
B
226 227anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 243first strand
Strand 2
B
246 247anti-parallel
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