Analysis of interatomic Contacts of Structural Units in PDB entry:
7VA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VA8 entry

There are 2 chains in PDB entry 7VA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9LYS 464
B
 SER 9LYS 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 7VA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 36Right-handed alpha
Helix 2
AA2
A
51 65Right-handed alpha
Helix 3
AA3
A
79 83Right-handed 310
Helix 4
AA4
A
87 98Right-handed alpha
Helix 5
AA5
A
99 101Right-handed 310
Helix 6
AA6
A
102 110Right-handed alpha
Helix 7
AA7
A
123 134Right-handed alpha
Helix 8
AA8
A
145 162Right-handed alpha
Helix 9
AA9
A
188 193Right-handed alpha
Helix 10
AB1
A
196 209Right-handed alpha
Helix 11
AB2
A
210 212Right-handed 310
Helix 12
AB3
A
220 225Right-handed 310
Helix 13
AB4
A
226 239Right-handed alpha
Helix 14
AB5
A
252 256Right-handed 310
Helix 15
AB6
A
260 268Right-handed alpha
Helix 16
AB7
A
286 301Right-handed alpha
Helix 17
AB8
A
313 317Right-handed 310
Helix 18
AB9
A
320 325Right-handed alpha
Helix 19
AC1
A
326 337Right-handed alpha
Helix 20
AC2
A
345 352Right-handed alpha
Helix 21
AC3
A
363 374Right-handed alpha
Helix 22
AC4
A
385 397Right-handed alpha
Helix 23
AC5
A
403 406Right-handed 310
Helix 24
AC6
A
414 428Right-handed alpha
Helix 25
AC7
A
428 447Right-handed alpha
Helix 26
AC8
A
450 464Right-handed alpha
Helix 27
AC9
B
20 37Right-handed alpha
Helix 28
AD1
B
51 65Right-handed alpha
Helix 29
AD2
B
87 99Right-handed alpha
Helix 30
AD3
B
102 110Right-handed alpha
Helix 31
AD4
B
123 134Right-handed alpha
Helix 32
AD5
B
145 161Right-handed alpha
Helix 33
AD6
B
188 192Right-handed 310
Helix 34
AD7
B
196 207Right-handed alpha
Helix 35
AD8
B
208 212Right-handed 310
Helix 36
AD9
B
220 225Right-handed 310
Helix 37
AE1
B
227 239Right-handed alpha
Helix 38
AE2
B
261 268Right-handed alpha
Helix 39
AE3
B
286 300Right-handed alpha
Helix 40
AE4
B
320 326Right-handed alpha
Helix 41
AE5
B
327 337Right-handed alpha
Helix 42
AE6
B
345 351Right-handed alpha
Helix 43
AE7
B
363 374Right-handed alpha
Helix 44
AE8
B
385 397Right-handed alpha
Helix 45
AE9
B
403 406Right-handed 310
Helix 46
AF1
B
414 428Right-handed alpha
Helix 47
AF2
B
429 446Right-handed alpha
Helix 48
AF3
B
450 462Right-handed alpha
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There are 5 sheets in PDB entry 7VA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
40 45parallel
Strand 3
A
12 16parallel
Strand 4
A
116 120parallel
Strand 5
A
138 142parallel
Strand 6
A
214 217parallel
Strand 7
A
243 245parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
303 307parallel
Strand 3
A
274 277parallel
Strand 4
A
355 360parallel
Strand 5
A
377 379parallel
Strand 6
A
399 401parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 72first strand
Strand 2
B
40 45parallel
Strand 3
B
12 16parallel
Strand 4
B
116 120parallel
Strand 5
B
138 142parallel
Strand 6
B
214 217parallel
Strand 7
B
243 245parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
182 183anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 340first strand
Strand 2
B
303 307parallel
Strand 3
B
274 277parallel
Strand 4
B
355 360parallel
Strand 5
B
377 379parallel
Strand 6
B
399 401parallel
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