Analysis of interatomic Contacts of Structural Units in PDB entry:
7VAZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VAZ entry

There are 9 chains in PDB entry 7VAZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLN 1	GLY 215
D	MET 1	PRO 217
G	PRO 4	GLY 13
A	ALA 2	ARG 214
B	GLU 2	PRO 217
E	PRO 4	GLY 13
F	ALA 2	CYS 217
H	VAL 3	LYS 214
I	THR 7	GLY 13

There are 31 helices in PDB entry 7VAZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	30	34	Right-handed 310
Helix 2	AA2	C	81	85	Right-handed 310
Helix 3	AA3	C	124	130	Right-handed alpha
Helix 4	AA4	C	186	192	Right-handed alpha
Helix 5	AA5	D	29	33	Right-handed 310
Helix 6	AA6	D	63	66	Right-handed 310
Helix 7	AA7	D	75	77	Right-handed 310
Helix 8	AA8	D	88	92	Right-handed 310
Helix 9	AA9	D	160	162	Right-handed 310
Helix 10	AB1	D	191	195	Right-handed 310
Helix 11	AB2	D	205	208	Right-handed 310
Helix 12	AB3	A	30	34	Right-handed 310
Helix 13	AB4	A	81	85	Right-handed 310
Helix 14	AB5	A	124	130	Right-handed alpha
Helix 15	AB6	A	186	192	Right-handed alpha
Helix 16	AB7	B	29	33	Right-handed 310
Helix 17	AB8	B	63	66	Right-handed 310
Helix 18	AB9	B	88	92	Right-handed 310
Helix 19	AC1	B	160	162	Right-handed 310
Helix 20	AC2	B	191	195	Right-handed 310
Helix 21	AC3	B	205	208	Right-handed 310
Helix 22	AC4	F	30	34	Right-handed 310
Helix 23	AC5	F	81	85	Right-handed 310
Helix 24	AC6	F	126	130	Right-handed 310
Helix 25	AC7	F	186	192	Right-handed alpha
Helix 26	AC8	H	29	33	Right-handed 310
Helix 27	AC9	H	63	66	Right-handed 310
Helix 28	AD1	H	88	92	Right-handed 310
Helix 29	AD2	H	135	137	Right-handed 310
Helix 30	AD3	H	160	162	Right-handed 310
Helix 31	AD4	H	205	208	Right-handed 310

There are 33 sheets in PDB entry 7VAZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	72	77	anti-parallel
Strand 4	C	64	69	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	104	108	parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	36	41	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	55	56	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	104	108	parallel
Strand 3	C	86	93	anti-parallel
Strand 4	C	98	100	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	121	first strand
Strand 2	C	132	142	anti-parallel
Strand 3	C	176	185	anti-parallel
Strand 4	C	162	166	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	148	153	anti-parallel
Strand 3	C	194	200	anti-parallel
Strand 4	C	208	213	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	69	74	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	111	115	parallel
Strand 3	D	93	100	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	59	61	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	13	first strand
Strand 2	D	111	115	parallel
Strand 3	D	93	100	anti-parallel
Strand 4	D	104	107	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	128	first strand
Strand 2	D	139	149	anti-parallel
Strand 3	D	180	189	anti-parallel
Strand 4	D	167	169	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	128	first strand
Strand 2	D	139	149	anti-parallel
Strand 3	D	180	189	anti-parallel
Strand 4	D	173	174	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	158	first strand
Strand 2	D	198	204	anti-parallel
Strand 3	D	209	215	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	17	24	anti-parallel
Strand 3	A	72	78	anti-parallel
Strand 4	A	64	69	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	104	108	parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	36	41	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	55	56	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	104	108	parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	98	100	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	121	first strand
Strand 2	A	132	142	anti-parallel
Strand 3	A	176	185	anti-parallel
Strand 4	A	162	166	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	148	153	anti-parallel
Strand 3	A	194	200	anti-parallel
Strand 4	A	208	213	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	9	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	69	74	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	111	115	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	34	40	anti-parallel
Strand 5	B	46	52	anti-parallel
Strand 6	B	59	61	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	111	115	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	104	107	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	128	first strand
Strand 2	B	139	149	anti-parallel
Strand 3	B	180	189	anti-parallel
Strand 4	B	167	169	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	136	first strand
Strand 2	B	139	149	anti-parallel
Strand 3	B	180	189	anti-parallel
Strand 4	B	173	174	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	158	first strand
Strand 2	B	199	204	anti-parallel
Strand 3	B	209	214	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	17	24	anti-parallel
Strand 3	F	72	78	anti-parallel
Strand 4	F	64	69	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	104	108	parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	36	41	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	55	56	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	104	108	parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	98	100	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	121	first strand
Strand 2	F	132	142	anti-parallel
Strand 3	F	176	185	anti-parallel
Strand 4	F	162	166	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	157	first strand
Strand 2	F	147	153	anti-parallel
Strand 3	F	195	201	anti-parallel
Strand 4	F	208	212	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	8	first strand
Strand 2	H	18	26	anti-parallel
Strand 3	H	79	85	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	111	115	parallel
Strand 3	H	93	100	anti-parallel
Strand 4	H	35	40	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	111	115	parallel
Strand 3	H	93	100	anti-parallel
Strand 4	H	104	107	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	173	174	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	200	204	anti-parallel
Strand 3	H	209	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VAZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VAZ