Analysis of interatomic Contacts of Structural Units in PDB entry:
7VBQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VBQ entry

There are 2 chains in PDB entry 7VBQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLN 291
B
 SER 9GLU 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7VBQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
41 57Right-handed alpha
Helix 3
AA3
A
83 88Right-handed alpha
Helix 4
AA4
A
88 94Right-handed alpha
Helix 5
AA5
A
95 97Right-handed 310
Helix 6
AA6
A
98 114Right-handed alpha
Helix 7
AA7
A
137 148Right-handed 310
Helix 8
AA8
A
167 171Right-handed 310
Helix 9
AA9
A
178 182Right-handed 310
Helix 10
AB1
A
190 194Right-handed 310
Helix 11
AB2
A
246 252Right-handed alpha
Helix 12
AB3
A
254 261Right-handed alpha
Helix 13
AB4
A
281 287Right-handed alpha
Helix 14
AB5
B
19 31Right-handed alpha
Helix 15
AB6
B
40 55Right-handed alpha
Helix 16
AB7
B
69 74Right-handed alpha
Helix 17
AB8
B
74 80Right-handed alpha
Helix 18
AB9
B
81 83Right-handed 310
Helix 19
AC1
B
84 100Right-handed alpha
Helix 20
AC2
B
128 134Right-handed 310
Helix 21
AC3
B
165 169Right-handed 310
Helix 22
AC4
B
177 181Right-handed 310
Helix 23
AC5
B
233 238Right-handed alpha
Helix 24
AC6
B
241 248Right-handed alpha
Helix 25
AC7
B
268 273Right-handed alpha
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There are 8 sheets in PDB entry 7VBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
33 36parallel
Strand 3
A
204 208anti-parallel
Strand 4
A
157 162anti-parallel
Strand 5
A
224 233anti-parallel
Strand 6
A
116 126anti-parallel
Strand 7
A
78 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
174 175anti-parallel
Strand 3
A
213 214anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
B
263 264parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
273 274anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
32 36parallel
Strand 3
B
191 195anti-parallel
Strand 4
B
144 149anti-parallel
Strand 5
B
211 220anti-parallel
Strand 6
B
102 112anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
66 67anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
160 162anti-parallel
Strand 3
B
200 202anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 254first strand
Strand 2
B
260 261anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il