Analysis of interatomic Contacts of Structural Units in PDB entry:
7VBR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VBR entry

There are 4 chains in PDB entry 7VBR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 8	TRP 250
B	SER 8	GLY 249
D	SER 9	ARG 251
C	VAL 10	ARG 251

There are 36 helices in PDB entry 7VBR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	40	54	Right-handed alpha
Helix 3	AA3	A	69	74	Right-handed alpha
Helix 4	AA4	A	74	79	Right-handed alpha
Helix 5	AA5	A	84	96	Right-handed alpha
Helix 6	AA6	A	165	169	Right-handed 310
Helix 7	AA7	A	177	181	Right-handed 310
Helix 8	AA8	A	234	238	Right-handed alpha
Helix 9	AA9	A	241	248	Right-handed alpha
Helix 10	AB1	B	19	31	Right-handed alpha
Helix 11	AB2	B	40	54	Right-handed alpha
Helix 12	AB3	B	69	74	Right-handed alpha
Helix 13	AB4	B	74	80	Right-handed alpha
Helix 14	AB5	B	84	100	Right-handed alpha
Helix 15	AB6	B	165	169	Right-handed 310
Helix 16	AB7	B	177	181	Right-handed 310
Helix 17	AB8	B	236	240	Right-handed 310
Helix 18	AB9	B	241	248	Right-handed alpha
Helix 19	AC1	D	19	31	Right-handed alpha
Helix 20	AC2	D	40	55	Right-handed alpha
Helix 21	AC3	D	69	74	Right-handed alpha
Helix 22	AC4	D	74	79	Right-handed alpha
Helix 23	AC5	D	84	96	Right-handed alpha
Helix 24	AC6	D	165	169	Right-handed 310
Helix 25	AC7	D	177	181	Right-handed 310
Helix 26	AC8	D	236	240	Right-handed 310
Helix 27	AC9	D	241	248	Right-handed alpha
Helix 28	AD1	C	19	31	Right-handed alpha
Helix 29	AD2	C	40	55	Right-handed alpha
Helix 30	AD3	C	69	74	Right-handed alpha
Helix 31	AD4	C	74	80	Right-handed alpha
Helix 32	AD5	C	84	100	Right-handed alpha
Helix 33	AD6	C	165	169	Right-handed 310
Helix 34	AD7	C	177	181	Right-handed 310
Helix 35	AD8	C	233	238	Right-handed alpha
Helix 36	AD9	C	241	248	Right-handed alpha

There are 12 sheets in PDB entry 7VBR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	A	32	35	parallel
Strand 3	A	191	195	anti-parallel
Strand 4	A	144	149	anti-parallel
Strand 5	A	211	220	anti-parallel
Strand 6	A	102	112	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	133	135	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	160	162	anti-parallel
Strand 3	A	200	202	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	32	35	parallel
Strand 3	B	191	195	anti-parallel
Strand 4	B	144	149	anti-parallel
Strand 5	B	211	220	anti-parallel
Strand 6	B	102	112	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	132	135	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	160	162	anti-parallel
Strand 3	B	200	202	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	32	35	parallel
Strand 3	D	191	195	anti-parallel
Strand 4	D	144	149	anti-parallel
Strand 5	D	211	220	anti-parallel
Strand 6	D	102	112	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	127	first strand
Strand 2	D	133	135	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	184	first strand
Strand 2	D	160	162	anti-parallel
Strand 3	D	200	202	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	32	36	parallel
Strand 3	C	191	195	anti-parallel
Strand 4	C	144	149	anti-parallel
Strand 5	C	211	220	anti-parallel
Strand 6	C	102	112	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	133	135	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	184	first strand
Strand 2	C	160	162	anti-parallel
Strand 3	C	200	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VBR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VBR