Analysis of interatomic Contacts of Structural Units in PDB entry:
7VBT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VBT entry

There are 2 chains in PDB entry 7VBT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4LEU 319
B
 VAL 6ASP 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 7VBT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
34 43Right-handed alpha
Helix 3
AA3
A
48 59Right-handed alpha
Helix 4
AA4
A
76 91Right-handed alpha
Helix 5
AA5
A
147 170Right-handed alpha
Helix 6
AA6
A
197 199Right-handed 310
Helix 7
AA7
A
204 222Right-handed alpha
Helix 8
AA8
A
257 278Right-handed alpha
Helix 9
AA9
A
286 290Right-handed 310
Helix 10
AB1
A
297 313Right-handed alpha
Helix 11
AB2
A
314 317Right-handed 310
Helix 12
AB3
B
13 27Right-handed alpha
Helix 13
AB4
B
34 43Right-handed alpha
Helix 14
AB5
B
48 59Right-handed alpha
Helix 15
AB6
B
76 91Right-handed alpha
Helix 16
AB7
B
147 171Right-handed alpha
Helix 17
AB8
B
197 199Right-handed 310
Helix 18
AB9
B
204 222Right-handed alpha
Helix 19
AC1
B
257 278Right-handed alpha
Helix 20
AC2
B
298 313Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7VBT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
96 103anti-parallel
Strand 3
A
107 113anti-parallel
Strand 4
A
119 125anti-parallel
Strand 5
A
185 188anti-parallel
Strand 6
A
178 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
71 75anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
234 237anti-parallel
Strand 3
A
242 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
251 252anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
96 103anti-parallel
Strand 3
B
107 113anti-parallel
Strand 4
B
119 125anti-parallel
Strand 5
B
185 188anti-parallel
Strand 6
B
178 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
71 75anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
234 237anti-parallel
Strand 3
B
242 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 225first strand
Strand 2
B
251 252anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il