Analysis of interatomic Contacts of Structural Units in PDB entry:
7VBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VBY entry

There are 10 chains in PDB entry 7VBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	CYS 76	GLY 361
A	GLY 25	LEU 67
D	PRO 13	LEU 48
F	GLY 25	LEU 67
G	VAL 2	GLY 55
E	PRO 13	LEU 48
I	CYS 76	GLY 361
H	ALA 63	GLN 118
C	ALA 62	GLN 118
J	VAL 2	GLY 55

There are 19 helices in PDB entry 7VBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	87	92	Right-handed alpha
Helix 2	AA2	B	308	310	Right-handed 310
Helix 3	AA3	A	26	37	Right-handed alpha
Helix 4	AA4	A	40	61	Right-handed alpha
Helix 5	AA5	D	14	48	Right-handed alpha
Helix 6	AA6	F	26	37	Right-handed alpha
Helix 7	AA7	F	40	61	Right-handed alpha
Helix 8	AA8	G	5	39	Right-handed alpha
Helix 9	AA9	G	48	53	Right-handed 310
Helix 10	AB1	E	15	48	Right-handed alpha
Helix 11	AB2	I	87	92	Right-handed alpha
Helix 12	AB3	I	308	310	Right-handed 310
Helix 13	AB4	H	64	96	Right-handed alpha
Helix 14	AB5	H	96	118	Right-handed alpha
Helix 15	AB6	C	63	96	Right-handed alpha
Helix 16	AB7	C	96	118	Right-handed alpha
Helix 17	AB8	J	6	25	Right-handed alpha
Helix 18	AB9	J	26	39	Right-handed alpha
Helix 19	AC1	J	48	53	Right-handed 310

There are 3 sheets in PDB entry 7VBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 21 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	199	209	anti-parallel
Strand 3	B	214	224	anti-parallel
Strand 4	B	229	240	anti-parallel
Strand 5	B	243	255	anti-parallel
Strand 6	B	259	266	anti-parallel
Strand 7	B	269	279	anti-parallel
Strand 8	B	282	291	anti-parallel
Strand 9	B	296	307	anti-parallel
Strand 10	B	312	319	anti-parallel
Strand 11	B	323	332	anti-parallel
Strand 12	B	337	346	anti-parallel
Strand 13	B	351	359	anti-parallel
Strand 14	B	100	110	parallel
Strand 15	B	113	121	anti-parallel
Strand 16	B	128	136	anti-parallel
Strand 17	B	149	155	anti-parallel
Strand 18	B	160	166	anti-parallel
Strand 19	B	174	181	anti-parallel
Strand 20	B	184	190	anti-parallel
Strand 21	B	199	209	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	142	first strand
Strand 2	B	145	146	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	110	first strand
Strand 2	I	113	121	anti-parallel
Strand 3	I	128	136	anti-parallel
Strand 4	I	149	155	anti-parallel
Strand 5	I	160	166	anti-parallel
Strand 6	I	172	181	anti-parallel
Strand 7	I	184	194	anti-parallel
Strand 8	I	199	209	anti-parallel
Strand 9	I	214	226	anti-parallel
Strand 10	I	229	239	anti-parallel
Strand 11	I	244	255	anti-parallel
Strand 12	I	259	266	anti-parallel
Strand 13	I	269	277	anti-parallel
Strand 14	I	282	291	anti-parallel
Strand 15	I	296	307	anti-parallel
Strand 16	I	312	319	anti-parallel
Strand 17	I	323	332	anti-parallel
Strand 18	I	337	346	anti-parallel
Strand 19	I	351	359	anti-parallel
Strand 20	I	100	110	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VBY