Analysis of interatomic Contacts of Structural Units in PDB entry:
7VC1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VC1 entry

There are 2 chains in PDB entry 7VC1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 333	TYR 830
B	THR 335	TYR 830

There are 31 helices in PDB entry 7VC1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	341	353	Right-handed alpha
Helix 2	AA2	A	368	389	Right-handed alpha
Helix 3	AA3	A	402	408	Right-handed alpha
Helix 4	AA4	A	440	452	Right-handed alpha
Helix 5	AA5	A	454	458	Right-handed 310
Helix 6	AA6	A	496	517	Right-handed alpha
Helix 7	AA7	A	564	571	Right-handed alpha
Helix 8	AA8	A	593	604	Right-handed alpha
Helix 9	AA9	A	612	616	Right-handed 310
Helix 10	AB1	A	631	648	Right-handed alpha
Helix 11	AB2	A	662	673	Right-handed alpha
Helix 12	AB3	A	682	689	Right-handed alpha
Helix 13	AB4	A	708	735	Right-handed alpha
Helix 14	AB5	A	741	743	Right-handed 310
Helix 15	AB6	A	744	751	Right-handed alpha
Helix 16	AB7	A	762	779	Right-handed alpha
Helix 17	AB8	B	341	353	Right-handed alpha
Helix 18	AB9	B	368	389	Right-handed alpha
Helix 19	AC1	B	402	407	Right-handed alpha
Helix 20	AC2	B	440	452	Right-handed alpha
Helix 21	AC3	B	454	458	Right-handed 310
Helix 22	AC4	B	496	518	Right-handed alpha
Helix 23	AC5	B	564	571	Right-handed alpha
Helix 24	AC6	B	593	604	Right-handed alpha
Helix 25	AC7	B	633	649	Right-handed alpha
Helix 26	AC8	B	662	674	Right-handed alpha
Helix 27	AC9	B	682	689	Right-handed alpha
Helix 28	AD1	B	708	735	Right-handed alpha
Helix 29	AD2	B	741	743	Right-handed 310
Helix 30	AD3	B	744	751	Right-handed alpha
Helix 31	AD4	B	762	781	Right-handed alpha

There are 10 sheets in PDB entry 7VC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	366	367	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	393	first strand
Strand 2	A	460	469	parallel
Strand 3	A	484	494	anti-parallel
Strand 4	A	585	592	anti-parallel
Strand 5	A	552	563	anti-parallel
Strand 6	A	539	547	anti-parallel
Strand 7	A	524	527	anti-parallel
Strand 8	A	796	801	anti-parallel
Strand 9	A	822	827	anti-parallel
Strand 10	A	754	759	anti-parallel
Strand 11	A	736	738	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	428	436	anti-parallel
Strand 3	A	420	425	anti-parallel
Strand 4	B	420	425	anti-parallel
Strand 5	B	428	436	anti-parallel
Strand 6	B	399	401	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	575	first strand
Strand 2	A	581	583	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	655	first strand
Strand 2	A	620	624	parallel
Strand 3	A	677	681	parallel
Strand 4	A	690	695	anti-parallel
Strand 5	A	701	705	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	357	first strand
Strand 2	B	366	367	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	393	first strand
Strand 2	B	460	469	parallel
Strand 3	B	484	494	anti-parallel
Strand 4	B	585	592	anti-parallel
Strand 5	B	552	563	anti-parallel
Strand 6	B	539	547	anti-parallel
Strand 7	B	524	527	anti-parallel
Strand 8	B	796	801	anti-parallel
Strand 9	B	822	829	anti-parallel
Strand 10	B	754	759	anti-parallel
Strand 11	B	736	738	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	393	first strand
Strand 2	B	460	469	parallel
Strand 3	B	484	494	anti-parallel
Strand 4	B	585	592	anti-parallel
Strand 5	B	552	563	anti-parallel
Strand 6	B	822	829	parallel
Strand 7	B	754	759	anti-parallel
Strand 8	B	736	738	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	575	first strand
Strand 2	B	581	583	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	655	first strand
Strand 2	B	620	624	parallel
Strand 3	B	677	681	parallel
Strand 4	B	690	695	anti-parallel
Strand 5	B	701	705	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VC1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VC1