Analysis of interatomic Contacts of Structural Units in PDB entry:
7VC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VC6 entry

There is 1 chain in PDB entry 7VC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ARG 743
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 7VC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
21 32Right-handed alpha
Helix 3
AA3
A
34 41Right-handed alpha
Helix 4
AA4
A
49 53Right-handed 310
Helix 5
AA5
A
91 99Right-handed alpha
Helix 6
AA6
A
100 121Right-handed alpha
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
151 168Right-handed alpha
Helix 9
AA9
A
192 196Right-handed 310
Helix 10
AB1
A
197 200Right-handed 310
Helix 11
AB2
A
206 213Right-handed alpha
Helix 12
AB3
A
215 223Right-handed alpha
Helix 13
AB4
A
245 250Right-handed alpha
Helix 14
AB5
A
270 276Right-handed alpha
Helix 15
AB6
A
283 295Right-handed alpha
Helix 16
AB7
A
302 314Right-handed alpha
Helix 17
AB8
A
318 336Right-handed alpha
Helix 18
AB9
A
341 349Right-handed 310
Helix 19
AC1
A
351 355Right-handed 310
Helix 20
AC2
A
357 372Right-handed alpha
Helix 21
AC3
A
400 405Right-handed 310
Helix 22
AC4
A
416 424Right-handed alpha
Helix 23
AC5
A
443 453Right-handed alpha
Helix 24
AC6
A
482 492Right-handed alpha
Helix 25
AC7
A
509 515Right-handed alpha
Helix 26
AC8
A
530 541Right-handed alpha
Helix 27
AC9
A
557 562Right-handed alpha
Helix 28
AD1
A
578 583Right-handed alpha
Helix 29
AD2
A
614 622Right-handed alpha
Helix 30
AD3
A
628 631Right-handed 310
Helix 31
AD4
A
694 698Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 7VC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
57 58anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
229 232parallel
Strand 3
A
263 266parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
236 237parallel
Strand 3
A
240 241anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 377first strand
Strand 2
A
520 525anti-parallel
Strand 3
A
497 502parallel
Strand 4
A
456 462parallel
Strand 5
A
389 393parallel
Strand 6
A
427 431parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 604first strand
Strand 2
A
633 643anti-parallel
Strand 3
A
685 693anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 613first strand
Strand 2
A
724 730parallel
Strand 3
A
712 716anti-parallel
Strand 4
A
649 659anti-parallel
Strand 5
A
670 680anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
699 700first strand
Strand 2
A
706 708anti-parallel
Strand 3
A
734 737anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il