Analysis of interatomic Contacts of Structural Units in PDB entry:
7VCF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VCF entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 40 chains in PDB entry 7VCF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 8	PHE 1794
A	LEU 1796	GLN 1989
B	LYS 137	ASP 338
B	GLU 340	TYR 343
B	VAL 345	PHE 798
C	ALA 256	VAL 327
C	ASP 329	SER 472
D	THR 27	PRO 95
F	ARG 529	VAL 563
F	GLU 565	ARG 930
G	TRP 328	ASP 397
H	LEU 74	TRP 175
H	ASP 179	ASP 185
I	MET 1	GLN 363
K	ALA 26	ARG 93
M	VAL 13	GLN 127
N	LYS 1271	GLU 1288
O	GLU 135	ALA 329
Q	THR 79	ARG 227
T	THR 14	GLU 41
T	GLU 43	ASN 76
T	GLU 78	VAL 167
T	ASP 169	GLU 172
T	ALA 174	GLU 211
T	GLU 213	ASP 228
T	GLU 230	ALA 238
T	ASP 240	GLU 243
T	ASP 245	ASN 248
T	GLU 250	GLU 250
T	GLU 252	ASP 504
T	ASP 506	ASP 509
T	ASP 511	ASP 513
T	VAL 515	ASP 522
T	ASP 524	ASP 536
T	GLU 538	ASP 705
T	ASP 707	ASP 707
T	GLY 709	GLU 711
T	GLU 713	GLU 713
T	ASP 715	ARG 856
W	ARG 96	GLN 259

There are180 helices in PDB entry 7VCF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	23	Right-handed alpha
Helix 2	AA2	A	34	55	Right-handed alpha
Helix 3	AA3	A	71	75	Right-handed 310
Helix 4	AA4	A	76	80	Right-handed 310
Helix 5	AA5	A	105	123	Right-handed alpha
Helix 6	AA6	A	127	140	Right-handed alpha
Helix 7	AA7	A	141	166	Right-handed alpha
Helix 8	AA8	A	167	177	Right-handed alpha
Helix 9	AA9	A	177	197	Right-handed alpha
Helix 10	AB1	A	205	221	Right-handed alpha
Helix 11	AB2	A	228	233	Right-handed alpha
Helix 12	AB3	A	250	282	Right-handed alpha
Helix 13	AB4	A	282	293	Right-handed alpha
Helix 14	AB5	A	303	322	Right-handed alpha
Helix 15	AB6	A	328	338	Right-handed alpha
Helix 16	AB7	A	343	347	Right-handed 310
Helix 17	AB8	A	359	363	Right-handed 310
Helix 18	AB9	A	373	377	Right-handed 310
Helix 19	AC1	A	385	389	Right-handed 310
Helix 20	AC2	A	411	417	Right-handed alpha
Helix 21	AC3	A	417	425	Right-handed alpha
Helix 22	AC4	A	426	430	Right-handed 310
Helix 23	AC5	A	470	480	Right-handed alpha
Helix 24	AC6	A	482	487	Right-handed alpha
Helix 25	AC7	A	539	544	Right-handed alpha
Helix 26	AC8	A	559	584	Right-handed alpha
Helix 27	AC9	A	602	611	Right-handed alpha
Helix 28	AD1	A	616	634	Right-handed alpha
Helix 29	AD2	A	641	646	Right-handed alpha
Helix 30	AD3	A	652	668	Right-handed alpha
Helix 31	AD4	A	680	698	Right-handed alpha
Helix 32	AD5	A	699	701	Right-handed 310
Helix 33	AD6	A	713	724	Right-handed alpha
Helix 34	AD7	A	731	739	Right-handed alpha
Helix 35	AD8	A	814	834	Right-handed alpha
Helix 36	AD9	A	835	838	Right-handed 310
Helix 37	AE1	A	839	850	Right-handed alpha
Helix 38	AE2	A	851	853	Right-handed 310
Helix 39	AE3	A	854	858	Right-handed 310
Helix 40	AE4	A	860	880	Right-handed alpha
Helix 41	AE5	A	881	887	Right-handed 310
Helix 42	AE6	A	891	897	Right-handed alpha
Helix 43	AE7	A	902	906	Right-handed 310
Helix 44	AE8	A	916	920	Right-handed alpha
Helix 45	AE9	A	954	959	Right-handed 310
Helix 46	AF1	A	967	981	Right-handed alpha
Helix 47	AF2	A	1046	1063	Right-handed alpha
Helix 48	AF3	A	1065	1104	Right-handed alpha
Helix 49	AF4	A	1130	1143	Right-handed alpha
Helix 50	AF5	A	1155	1181	Right-handed alpha
Helix 51	AF6	A	1231	1245	Right-handed alpha
Helix 52	AF7	A	1251	1262	Right-handed alpha
Helix 53	AF8	A	1397	1412	Right-handed alpha
Helix 54	AF9	A	1430	1436	Right-handed alpha
Helix 55	AG1	A	1438	1448	Right-handed alpha
Helix 56	AG2	A	1453	1490	Right-handed alpha
Helix 57	AG3	A	1624	1631	Right-handed alpha
Helix 58	AG4	A	1640	1644	Right-handed alpha
Helix 59	AG5	A	1646	1654	Right-handed alpha
Helix 60	AG6	A	1690	1694	Right-handed 310
Helix 61	AG7	A	1698	1719	Right-handed alpha
Helix 62	AG8	A	1720	1725	Right-handed alpha
Helix 63	AG9	A	1745	1753	Right-handed 310
Helix 64	AH1	A	1758	1762	Right-handed 310
Helix 65	AH2	A	1773	1787	Right-handed alpha
Helix 66	AH3	A	1803	1807	Right-handed 310
Helix 67	AH4	A	1955	1971	Right-handed alpha
Helix 68	AH5	A	1973	1975	Right-handed 310
Helix 69	AH6	A	1976	1989	Right-handed alpha
Helix 70	AH7	B	179	185	Right-handed alpha
Helix 71	AH8	B	196	211	Right-handed alpha
Helix 72	AH9	B	258	269	Right-handed alpha
Helix 73	AI1	B	279	295	Right-handed alpha
Helix 74	AI2	B	353	362	Right-handed alpha
Helix 75	AI3	B	370	383	Right-handed alpha
Helix 76	AI4	B	436	440	Right-handed 310
Helix 77	AI5	B	657	663	Right-handed alpha
Helix 78	AI6	B	685	689	Right-handed 310
Helix 79	AI7	B	724	727	Right-handed 310
Helix 80	AI8	B	751	756	Right-handed alpha
Helix 81	AI9	C	257	277	Right-handed alpha
Helix 82	AJ1	C	278	280	Right-handed 310
Helix 83	AJ2	C	281	288	Right-handed alpha
Helix 84	AJ3	C	290	303	Right-handed alpha
Helix 85	AJ4	C	306	324	Right-handed alpha
Helix 86	AJ5	C	327	364	Right-handed alpha
Helix 87	AJ6	C	368	377	Right-handed alpha
Helix 88	AJ7	C	379	387	Right-handed alpha
Helix 89	AJ8	C	391	397	Right-handed 310
Helix 90	AJ9	C	414	426	Right-handed alpha
Helix 91	AK1	C	432	447	Right-handed alpha
Helix 92	AK2	C	459	467	Right-handed alpha
Helix 93	AK3	D	28	36	Right-handed alpha
Helix 94	AK4	D	38	50	Right-handed alpha
Helix 95	AK5	D	58	82	Right-handed alpha
Helix 96	AK6	F	532	541	Right-handed alpha
Helix 97	AK7	F	566	587	Right-handed alpha
Helix 98	AK8	F	588	624	Right-handed alpha
Helix 99	AK9	F	646	650	Right-handed 310
Helix 100	AL1	F	904	909	Right-handed 310
Helix 101	AL2	F	910	920	Right-handed alpha
Helix 102	AL3	F	921	928	Right-handed alpha
Helix 103	AL4	G	329	374	Right-handed alpha
Helix 104	AL5	G	383	394	Right-handed alpha
Helix 105	AL6	H	75	105	Right-handed alpha
Helix 106	AL7	H	113	131	Right-handed alpha
Helix 107	AL8	H	143	160	Right-handed alpha
Helix 108	AL9	I	19	29	Right-handed alpha
Helix 109	AM1	I	95	104	Right-handed alpha
Helix 110	AM2	I	223	238	Right-handed alpha
Helix 111	AM3	I	239	242	Right-handed 310
Helix 112	AM4	I	243	249	Right-handed 310
Helix 113	AM5	I	251	260	Right-handed alpha
Helix 114	AM6	K	27	41	Right-handed alpha
Helix 115	AM7	K	46	55	Right-handed alpha
Helix 116	AM8	K	78	83	Right-handed alpha
Helix 117	AM9	M	24	44	Right-handed alpha
Helix 118	AN1	M	59	78	Right-handed alpha
Helix 119	AN2	M	97	102	Right-handed alpha
Helix 120	AN3	M	102	111	Right-handed alpha
Helix 121	AN4	M	111	117	Right-handed alpha
Helix 122	AN5	N	1275	1288	Right-handed alpha
Helix 123	AN6	O	136	168	Right-handed alpha
Helix 124	AN7	O	168	181	Right-handed alpha
Helix 125	AN8	O	183	206	Right-handed alpha
Helix 126	AN9	O	213	219	Right-handed alpha
Helix 127	AO1	O	224	231	Right-handed alpha
Helix 128	AO2	O	233	237	Right-handed 310
Helix 129	AO3	O	249	261	Right-handed alpha
Helix 130	AO4	O	278	287	Right-handed alpha
Helix 131	AO5	O	288	303	Right-handed alpha
Helix 132	AO6	O	305	311	Right-handed alpha
Helix 133	AO7	O	314	323	Right-handed alpha
Helix 134	AO8	Q	80	93	Right-handed alpha
Helix 135	AO9	Q	101	106	Right-handed 310
Helix 136	AP1	Q	126	140	Right-handed alpha
Helix 137	AP2	Q	159	169	Right-handed alpha
Helix 138	AP3	Q	190	192	Right-handed 310
Helix 139	AP4	Q	194	200	Right-handed alpha
Helix 140	AP5	Q	201	215	Right-handed alpha
Helix 141	AP6	Q	215	227	Right-handed alpha
Helix 142	AP7	T	15	19	Right-handed 310
Helix 143	AP8	T	32	37	Right-handed alpha
Helix 144	AP9	T	40	44	Right-handed 310
Helix 145	AQ1	T	46	67	Right-handed alpha
Helix 146	AQ2	T	76	86	Right-handed alpha
Helix 147	AQ3	T	155	162	Right-handed alpha
Helix 148	AQ4	T	172	186	Right-handed alpha
Helix 149	AQ5	T	205	209	Right-handed 310
Helix 150	AQ6	T	214	221	Right-handed alpha
Helix 151	AQ7	T	228	236	Right-handed alpha
Helix 152	AQ8	T	271	277	Right-handed 310
Helix 153	AQ9	T	382	391	Right-handed alpha
Helix 154	AR1	T	394	409	Right-handed alpha
Helix 155	AR2	T	425	427	Right-handed 310
Helix 156	AR3	T	428	438	Right-handed alpha
Helix 157	AR4	T	441	461	Right-handed alpha
Helix 158	AR5	T	463	481	Right-handed alpha
Helix 159	AR6	T	515	520	Right-handed alpha
Helix 160	AR7	T	546	570	Right-handed alpha
Helix 161	AR8	T	582	587	Right-handed alpha
Helix 162	AR9	T	589	602	Right-handed alpha
Helix 163	AS1	T	603	614	Right-handed alpha
Helix 164	AS2	T	643	658	Right-handed alpha
Helix 165	AS3	T	661	675	Right-handed alpha
Helix 166	AS4	T	721	741	Right-handed alpha
Helix 167	AS5	T	748	755	Right-handed alpha
Helix 168	AS6	T	776	780	Right-handed 310
Helix 169	AS7	T	782	787	Right-handed alpha
Helix 170	AS8	T	793	813	Right-handed alpha
Helix 171	AS9	T	824	856	Right-handed alpha
Helix 172	AT1	W	102	121	Right-handed alpha
Helix 173	AT2	W	124	129	Right-handed alpha
Helix 174	AT3	W	131	139	Right-handed 310
Helix 175	AT4	W	141	148	Right-handed alpha
Helix 176	AT5	W	153	166	Right-handed alpha
Helix 177	AT6	W	173	198	Right-handed alpha
Helix 178	AT7	W	201	206	Right-handed alpha
Helix 179	AT8	W	208	235	Right-handed alpha
Helix 180	AT9	W	243	257	Right-handed alpha

There are 26 sheets in PDB entry 7VCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	M	83	85	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	1590	1593	anti-parallel
Strand 3	A	1580	1583	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	601	first strand
Strand 2	I	179	182	parallel
Strand 3	I	187	189	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	755	758	first strand
Strand 2	T	165	168	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	914	915	first strand
Strand 2	T	287	288	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	941	942	first strand
Strand 2	T	815	816	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1348	1352	first strand
Strand 2	K	87	91	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1375	1376	first strand
Strand 2	A	1383	1384	anti-parallel
Strand 3	A	1388	1389	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1605	1606	first strand
Strand 2	A	1613	1614	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1638	1639	first strand
Strand 2	A	1743	1744	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1795	1796	first strand
Strand 2	T	222	223	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1826	1827	first strand
Strand 2	T	101	102	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1922	1923	first strand
Strand 2	O	222	223	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	232	238	parallel
Strand 3	B	218	224	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	253	first strand
Strand 2	B	313	320	parallel
Strand 3	B	301	306	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	346	first strand
Strand 2	B	322	333	anti-parallel
Strand 3	B	403	412	parallel
Strand 4	B	387	395	anti-parallel

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There are 18 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	F	891	900	anti-parallel
Strand 3	B	416	423	anti-parallel
Strand 4	B	445	453	anti-parallel
Strand 5	B	458	465	anti-parallel
Strand 6	B	477	488	anti-parallel
Strand 7	B	491	503	anti-parallel
Strand 8	B	519	533	anti-parallel
Strand 9	B	537	551	anti-parallel
Strand 10	B	583	600	anti-parallel
Strand 11	B	605	617	anti-parallel
Strand 12	B	637	649	anti-parallel
Strand 13	B	670	682	anti-parallel
Strand 14	B	712	722	anti-parallel
Strand 15	B	731	740	anti-parallel
Strand 16	B	761	770	anti-parallel
Strand 17	B	775	782	anti-parallel
Strand 18	B	788	794	anti-parallel

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There are 15 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	F	891	900	anti-parallel
Strand 3	F	877	885	anti-parallel
Strand 4	F	860	874	anti-parallel
Strand 5	F	843	852	anti-parallel
Strand 6	F	824	836	anti-parallel
Strand 7	F	806	818	anti-parallel
Strand 8	F	791	803	anti-parallel
Strand 9	F	770	782	anti-parallel
Strand 10	F	750	762	anti-parallel
Strand 11	F	733	745	anti-parallel
Strand 12	F	712	725	anti-parallel
Strand 13	F	699	707	anti-parallel
Strand 14	F	677	686	anti-parallel
Strand 15	F	661	666	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	690	692	first strand
Strand 2	B	706	709	anti-parallel

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There are 17 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	36	51	first strand
Strand 2	I	58	74	anti-parallel
Strand 3	I	78	91	anti-parallel
Strand 4	I	109	119	anti-parallel
Strand 5	I	122	129	anti-parallel
Strand 6	I	134	145	anti-parallel
Strand 7	I	148	157	anti-parallel
Strand 8	I	162	171	anti-parallel
Strand 9	I	198	207	anti-parallel
Strand 10	I	214	222	anti-parallel
Strand 11	I	275	282	anti-parallel
Strand 12	I	291	298	anti-parallel
Strand 13	I	305	312	anti-parallel
Strand 14	I	317	324	anti-parallel
Strand 15	I	327	335	anti-parallel
Strand 16	I	347	356	anti-parallel
Strand 17	I	36	51	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	22	23	first strand
Strand 2	W	237	238	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	123	124	first strand
Strand 2	T	24	25	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	146	147	first strand
Strand 2	Q	177	179	anti-parallel
Strand 3	Q	187	188	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	292	297	first strand
Strand 2	T	303	309	anti-parallel
Strand 3	T	312	320	anti-parallel
Strand 4	T	339	345	anti-parallel
Strand 5	T	348	356	anti-parallel
Strand 6	T	362	368	anti-parallel
Strand 7	T	375	381	anti-parallel
Strand 8	T	411	415	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	491	493	first strand
Strand 2	T	499	501	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	573	575	first strand
Strand 2	T	580	581	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VCF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VCF