Analysis of interatomic Contacts of Structural Units in PDB entry:
7VCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VCM entry

There are 4 chains in PDB entry 7VCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 3LEU 65
A
VAL 69MET 383
B
LYS 4LEU 65
B
VAL 69MET 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7VCM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
3 10Right-handed 310
Helix 2
AA2
A
57 62Right-handed 310
Helix 3
AA3
A
69 73Right-handed 310
Helix 4
AA4
A
76 82Right-handed 310
Helix 5
AA5
A
83 88Right-handed alpha
Helix 6
AA6
A
173 185Right-handed alpha
Helix 7
AA7
A
189 191Right-handed 310
Helix 8
AA8
A
210 223Right-handed alpha
Helix 9
AA9
A
253 263Right-handed alpha
Helix 10
AB1
A
264 266Right-handed 310
Helix 11
AB2
A
267 275Right-handed alpha
Helix 12
AB3
A
281 285Right-handed 310
Helix 13
AB4
A
306 309Right-handed 310
Helix 14
AB5
B
5 10Right-handed 310
Helix 15
AB6
B
57 62Right-handed 310
Helix 16
AB7
B
69 73Right-handed 310
Helix 17
AB8
B
76 82Right-handed 310
Helix 18
AB9
B
83 88Right-handed alpha
Helix 19
AC1
B
173 185Right-handed alpha
Helix 20
AC2
B
189 191Right-handed 310
Helix 21
AC3
B
210 223Right-handed alpha
Helix 22
AC4
B
253 262Right-handed alpha
Helix 23
AC5
B
264 266Right-handed 310
Helix 24
AC6
B
267 275Right-handed alpha
Helix 25
AC7
B
281 285Right-handed 310
Helix 26
AC8
B
306 309Right-handed 310
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There are 6 sheets in PDB entry 7VCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
12 23first strand
Strand 2
A
26 37anti-parallel
Strand 3
A
42 49anti-parallel
Strand 4
A
367 378anti-parallel
Strand 5
A
349 358anti-parallel
Strand 6
A
300 305anti-parallel
Strand 7
A
310 320anti-parallel
Strand 8
A
326 337anti-parallel
Strand 9
A
93 101anti-parallel
Strand 10
A
106 116anti-parallel
Strand 11
A
119 129anti-parallel
Strand 12
A
12 23parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 152first strand
Strand 2
A
229 236anti-parallel
Strand 3
A
201 209parallel
Strand 4
A
193 198anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
244 247first strand
Strand 2
A
290 293anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
12 23first strand
Strand 2
B
26 37anti-parallel
Strand 3
B
42 49anti-parallel
Strand 4
B
367 378anti-parallel
Strand 5
B
349 358anti-parallel
Strand 6
B
300 305anti-parallel
Strand 7
B
310 320anti-parallel
Strand 8
B
326 337anti-parallel
Strand 9
B
93 101anti-parallel
Strand 10
B
106 116anti-parallel
Strand 11
B
119 129anti-parallel
Strand 12
B
12 23parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 152first strand
Strand 2
B
229 236anti-parallel
Strand 3
B
201 209parallel
Strand 4
B
193 198anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
244 247first strand
Strand 2
B
290 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il