Analysis of interatomic Contacts of Structural Units in PDB entry:
7VCO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VCO entry

There is 1 chain in PDB entry 7VCO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1GLY 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 7VCO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 17Right-handed alpha
Helix 2
AA2
A
89 93Right-handed 310
Helix 3
AA3
A
121 125Right-handed 310
Helix 4
AA4
A
301 306Right-handed 310
Helix 5
AA5
A
332 336Right-handed 310
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There are 7 sheets in PDB entry 7VCO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
48 56anti-parallel
Strand 4
A
34 45anti-parallel
Strand 5
A
308 309parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 104first strand
Strand 2
A
107 119anti-parallel
Strand 3
A
126 136anti-parallel
Strand 4
A
143 149anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 165first strand
Strand 2
A
170 177anti-parallel
Strand 3
A
183 190anti-parallel
Strand 4
A
197 204anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 221first strand
Strand 2
A
224 232anti-parallel
Strand 3
A
248 253anti-parallel
Strand 4
A
261 268anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 282first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
316 320anti-parallel
Strand 4
A
326 330anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 355first strand
Strand 2
A
463 483anti-parallel
Strand 3
A
378 385anti-parallel
Strand 4
A
393 398anti-parallel
Strand 5
A
403 407anti-parallel
Strand 6
A
418 422anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 355first strand
Strand 2
A
463 483anti-parallel
Strand 3
A
363 370anti-parallel
Strand 4
A
428 436anti-parallel
Strand 5
A
439 444anti-parallel
Strand 6
A
450 454anti-parallel
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