Analysis of interatomic Contacts of Structural Units in PDB entry:
7VCQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VCQ entry

There are 10 chains in PDB entry 7VCQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 60	ARG 134
B	ARG 17	GLY 101
D	MET 1	ASN 155
C	LEU 60	GLU 133
E	LEU 22	GLY 101
F	ALA 2	ASP 154
G	LEU 60	GLU 133
H	ASP 24	GLY 101
I	ALA 2	ASP 154
K	GLU 60	ASP 100

There are 30 helices in PDB entry 7VCQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	78	Right-handed alpha
Helix 2	AA2	A	85	114	Right-handed alpha
Helix 3	AA3	A	120	130	Right-handed alpha
Helix 4	AA4	B	30	41	Right-handed alpha
Helix 5	AA5	B	48	76	Right-handed alpha
Helix 6	AA6	B	82	92	Right-handed alpha
Helix 7	AA7	D	50	52	Right-handed 310
Helix 8	AA8	D	80	84	Right-handed 310
Helix 9	AA9	D	85	89	Right-handed 310
Helix 10	AB1	D	119	125	Right-handed alpha
Helix 11	AB2	C	63	78	Right-handed alpha
Helix 12	AB3	C	85	114	Right-handed alpha
Helix 13	AB4	C	120	131	Right-handed alpha
Helix 14	AB5	E	30	42	Right-handed alpha
Helix 15	AB6	E	49	75	Right-handed alpha
Helix 16	AB7	E	83	94	Right-handed alpha
Helix 17	AB8	F	50	52	Right-handed 310
Helix 18	AB9	F	80	84	Right-handed 310
Helix 19	AC1	F	119	125	Right-handed alpha
Helix 20	AC2	G	63	77	Right-handed alpha
Helix 21	AC3	G	85	108	Right-handed alpha
Helix 22	AC4	G	120	130	Right-handed alpha
Helix 23	AC5	H	30	41	Right-handed alpha
Helix 24	AC6	H	49	77	Right-handed alpha
Helix 25	AC7	H	83	92	Right-handed alpha
Helix 26	AC8	I	50	52	Right-handed 310
Helix 27	AC9	I	80	84	Right-handed 310
Helix 28	AD1	I	85	89	Right-handed 310
Helix 29	AD2	I	119	124	Right-handed alpha
Helix 30	AD3	I	131	133	Right-handed 310

There are 12 sheets in PDB entry 7VCQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	K	94	97	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	K	61	63	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	D	145	148	anti-parallel
Strand 3	D	104	117	anti-parallel
Strand 4	D	135	139	anti-parallel
Strand 5	D	16	17	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	97	first strand
Strand 2	D	145	148	anti-parallel
Strand 3	D	104	117	anti-parallel
Strand 4	D	91	101	anti-parallel
Strand 5	D	38	45	anti-parallel
Strand 6	D	54	62	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	12	first strand
Strand 2	D	22	30	anti-parallel
Strand 3	D	68	76	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	97	first strand
Strand 2	F	135	148	anti-parallel
Strand 3	F	16	17	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	97	first strand
Strand 2	F	135	148	anti-parallel
Strand 3	F	104	117	anti-parallel
Strand 4	F	91	101	anti-parallel
Strand 5	F	38	45	anti-parallel
Strand 6	F	54	62	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	12	first strand
Strand 2	F	22	30	anti-parallel
Strand 3	F	68	76	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	98	first strand
Strand 2	I	145	148	anti-parallel
Strand 3	I	104	117	anti-parallel
Strand 4	I	135	139	anti-parallel
Strand 5	I	16	17	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	98	first strand
Strand 2	I	145	148	anti-parallel
Strand 3	I	104	117	anti-parallel
Strand 4	I	91	101	anti-parallel
Strand 5	I	38	45	anti-parallel
Strand 6	I	54	62	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	11	first strand
Strand 2	I	22	30	anti-parallel
Strand 3	I	68	76	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VCQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VCQ