Analysis of interatomic Contacts of Structural Units in PDB entry:
7VDH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VDH entry

There are 5 chains in PDB entry 7VDH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
LEU 23TRP 289
A
THR 4PHE 354
B
SER 2ASN 340
G
ALA 7PHE 61
S
VAL 2LEU 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 7VDH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
R
27 29Right-handed 310
Helix 2
AA2
R
30 57Right-handed alpha
Helix 3
AA3
R
62 94Right-handed alpha
Helix 4
AA4
R
103 133Right-handed alpha
Helix 5
AA5
R
133 139Right-handed alpha
Helix 6
AA6
R
144 167Right-handed alpha
Helix 7
AA7
R
176 213Right-handed alpha
Helix 8
AA8
R
217 235Right-handed alpha
Helix 9
AA9
R
236 245Right-handed alpha
Helix 10
AB1
R
245 250Right-handed alpha
Helix 11
AB2
R
256 280Right-handed alpha
Helix 12
AB3
R
280 285Right-handed alpha
Helix 13
AB4
A
6 32Right-handed alpha
Helix 14
AB5
A
45 54Right-handed alpha
Helix 15
AB6
A
207 212Right-handed alpha
Helix 16
AB7
A
213 216Right-handed 310
Helix 17
AB8
A
242 255Right-handed alpha
Helix 18
AB9
A
270 279Right-handed alpha
Helix 19
AC1
A
282 286Right-handed 310
Helix 20
AC2
A
295 309Right-handed alpha
Helix 21
AC3
A
330 351Right-handed alpha
Helix 22
AC4
B
3 24Right-handed alpha
Helix 23
AC5
B
29 34Right-handed alpha
Helix 24
AC6
G
8 24Right-handed alpha
Helix 25
AC7
G
29 44Right-handed alpha
Helix 26
AC8
G
45 48Right-handed 310
Helix 27
AC9
S
28 32Right-handed 310
Helix 28
AD1
S
53 56Right-handed 310
Back to top of page

There are 13 sheets in PDB entry 7VDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
185 190first strand
Strand 2
A
195 200anti-parallel
Strand 3
A
34 38parallel
Strand 4
A
220 226parallel
Strand 5
A
263 269parallel
Strand 6
A
319 323parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 51first strand
Strand 2
B
336 339anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
89 94anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 105first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
134 139anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
165 170anti-parallel
Strand 4
B
176 181anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 192first strand
Strand 2
B
199 203anti-parallel
Strand 3
B
207 210anti-parallel
Strand 4
B
220 223anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 264anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
304 308anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
3 7first strand
Strand 2
S
17 25anti-parallel
Strand 3
S
78 84anti-parallel
Strand 4
S
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
10 12first strand
Strand 2
S
115 119parallel
Strand 3
S
92 99anti-parallel
Strand 4
S
33 39anti-parallel
Strand 5
S
45 51anti-parallel
Strand 6
S
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
10 12first strand
Strand 2
S
115 119parallel
Strand 3
S
92 99anti-parallel
Strand 4
S
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
128 129first strand
Strand 2
S
143 149anti-parallel
Strand 3
S
199 204anti-parallel
Strand 4
S
191 196anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
134 136first strand
Strand 2
S
231 234parallel
Strand 3
S
214 219anti-parallel
Strand 4
S
162 167anti-parallel
Strand 5
S
173 178anti-parallel
Strand 6
S
182 183anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il