Analysis of interatomic Contacts of Structural Units in PDB entry:
7VDL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VDL entry

There are 6 chains in PDB entry 7VDL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	LEU 353
B	SER 2	ASN 340
C	ALA 7	PHE 61
S	VAL 2	LEU 235
R	THR 30	PHE 285
L	CYS 22	PHE 26

There are 28 helices in PDB entry 7VDL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	32	Right-handed alpha
Helix 2	AA2	A	45	54	Right-handed alpha
Helix 3	AA3	A	207	216	Right-handed 310
Helix 4	AA4	A	228	231	Right-handed 310
Helix 5	AA5	A	242	255	Right-handed alpha
Helix 6	AA6	A	256	260	Right-handed 310
Helix 7	AA7	A	270	281	Right-handed alpha
Helix 8	AA8	A	282	286	Right-handed 310
Helix 9	AA9	A	297	309	Right-handed alpha
Helix 10	AB1	A	329	351	Right-handed alpha
Helix 11	AB2	B	3	24	Right-handed alpha
Helix 12	AB3	B	29	34	Right-handed alpha
Helix 13	AB4	C	8	24	Right-handed alpha
Helix 14	AB5	C	29	44	Right-handed alpha
Helix 15	AB6	S	28	32	Right-handed 310
Helix 16	AB7	S	53	56	Right-handed 310
Helix 17	AB8	S	87	91	Right-handed 310
Helix 18	AB9	R	31	58	Right-handed alpha
Helix 19	AC1	R	62	94	Right-handed alpha
Helix 20	AC2	R	104	133	Right-handed alpha
Helix 21	AC3	R	133	139	Right-handed alpha
Helix 22	AC4	R	144	169	Right-handed alpha
Helix 23	AC5	R	176	213	Right-handed alpha
Helix 24	AC6	R	217	235	Right-handed alpha
Helix 25	AC7	R	236	245	Right-handed alpha
Helix 26	AC8	R	246	249	Right-handed 310
Helix 27	AC9	R	254	280	Right-handed alpha
Helix 28	AD1	R	280	285	Right-handed alpha

There are 14 sheets in PDB entry 7VDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	195	200	parallel
Strand 3	A	185	190	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	226	first strand
Strand 2	A	263	269	parallel
Strand 3	A	319	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	122	125	anti-parallel
Strand 4	B	134	137	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	265	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	93	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	93	99	anti-parallel
Strand 4	S	110	111	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	129	130	first strand
Strand 2	S	143	148	anti-parallel
Strand 3	S	199	204	anti-parallel
Strand 4	S	191	196	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	213	219	anti-parallel
Strand 4	S	162	167	anti-parallel
Strand 5	S	173	178	anti-parallel
Strand 6	S	182	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VDL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VDL