Analysis of interatomic Contacts of Structural Units in PDB entry:
7VDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VDS entry

There are 4 chains in PDB entry 7VDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2PRO 291
B
 LYS 3ASP 288
C
 ALA 146SER 293
D
 SER 147SER 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7VDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 56Right-handed alpha
Helix 2
AA2
A
87 94Right-handed alpha
Helix 3
AA3
A
99 120Right-handed alpha
Helix 4
AA4
A
128 130Right-handed 310
Helix 5
AA5
A
164 168Right-handed 310
Helix 6
AA6
A
169 174Right-handed alpha
Helix 7
AA7
A
181 196Right-handed alpha
Helix 8
AA8
A
207 220Right-handed alpha
Helix 9
AA9
A
229 233Right-handed 310
Helix 10
AB1
A
256 267Right-handed alpha
Helix 11
AB2
A
270 274Right-handed 310
Helix 12
AB3
A
276 282Right-handed alpha
Helix 13
AB4
A
283 287Right-handed 310
Helix 14
AB5
B
43 56Right-handed alpha
Helix 15
AB6
B
87 94Right-handed alpha
Helix 16
AB7
B
99 120Right-handed alpha
Helix 17
AB8
B
128 130Right-handed 310
Helix 18
AB9
B
164 168Right-handed 310
Helix 19
AC1
B
169 174Right-handed alpha
Helix 20
AC2
B
181 196Right-handed alpha
Helix 21
AC3
B
207 220Right-handed alpha
Helix 22
AC4
B
229 233Right-handed 310
Helix 23
AC5
B
256 267Right-handed alpha
Helix 24
AC6
B
270 274Right-handed 310
Helix 25
AC7
B
276 282Right-handed alpha
Helix 26
AC8
B
283 287Right-handed 310
Helix 27
AC9
C
147 163Right-handed alpha
Helix 28
AD1
C
172 188Right-handed alpha
Helix 29
AD2
C
197 212Right-handed alpha
Helix 30
AD3
C
218 238Right-handed alpha
Helix 31
AD4
C
253 278Right-handed alpha
Helix 32
AD5
C
278 291Right-handed alpha
Helix 33
AD6
D
148 163Right-handed alpha
Helix 34
AD7
D
171 188Right-handed alpha
Helix 35
AD8
D
197 212Right-handed alpha
Helix 36
AD9
D
218 238Right-handed alpha
Helix 37
AE1
D
253 278Right-handed alpha
Helix 38
AE2
D
278 291Right-handed alpha
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There are 6 sheets in PDB entry 7VDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 12first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
75 81anti-parallel
Strand 5
A
66 72anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
132 134anti-parallel
Strand 3
A
140 142anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
149 150anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
29 35anti-parallel
Strand 4
B
75 81anti-parallel
Strand 5
B
66 72anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
132 134anti-parallel
Strand 3
B
140 142anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
149 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il