Analysis of interatomic Contacts of Structural Units in PDB entry:
7VDT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VDT entry

There are 11 chains in PDB entry 7VDT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 540	SER 1349
B	ALA 15	GLY 101
C	ALA 12	LYS 118
D	SER 32	ALA 124
E	ARG 40	ARG 134
F	ARG 17	GLY 102
G	ALA 12	LYS 119
H	SER 32	ALA 124
I	G 13	A 147
J	T 1	G 137
K	LYS 37	ARG 134

There are 65 helices in PDB entry 7VDT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	542	558	Right-handed alpha
Helix 2	AA2	A	732	736	Right-handed alpha
Helix 3	AA3	A	755	771	Right-handed alpha
Helix 4	AA4	A	784	799	Right-handed alpha
Helix 5	AA5	A	811	813	Right-handed 310
Helix 6	AA6	A	814	826	Right-handed alpha
Helix 7	AA7	A	837	844	Right-handed alpha
Helix 8	AA8	A	844	851	Right-handed alpha
Helix 9	AA9	A	860	866	Right-handed alpha
Helix 10	AB1	A	866	871	Right-handed alpha
Helix 11	AB2	A	883	888	Right-handed 310
Helix 12	AB3	A	891	901	Right-handed alpha
Helix 13	AB4	A	918	929	Right-handed alpha
Helix 14	AB5	A	962	972	Right-handed alpha
Helix 15	AB6	A	980	985	Right-handed alpha
Helix 16	AB7	A	1001	1014	Right-handed alpha
Helix 17	AB8	A	1037	1048	Right-handed alpha
Helix 18	AB9	A	1049	1053	Right-handed 310
Helix 19	AC1	A	1054	1063	Right-handed alpha
Helix 20	AC2	A	1072	1079	Right-handed alpha
Helix 21	AC3	A	1079	1095	Right-handed alpha
Helix 22	AC4	A	1105	1119	Right-handed alpha
Helix 23	AC5	A	1131	1144	Right-handed alpha
Helix 24	AC6	A	1156	1160	Right-handed alpha
Helix 25	AC7	A	1179	1188	Right-handed alpha
Helix 26	AC8	A	1209	1229	Right-handed alpha
Helix 27	AC9	A	1241	1253	Right-handed alpha
Helix 28	AD1	A	1267	1274	Right-handed alpha
Helix 29	AD2	A	1276	1295	Right-handed alpha
Helix 30	AD3	A	1310	1316	Right-handed alpha
Helix 31	AD4	B	16	22	Right-handed alpha
Helix 32	AD5	B	24	29	Right-handed 310
Helix 33	AD6	B	30	41	Right-handed alpha
Helix 34	AD7	B	49	76	Right-handed alpha
Helix 35	AD8	B	82	93	Right-handed alpha
Helix 36	AD9	C	16	21	Right-handed alpha
Helix 37	AE1	C	26	37	Right-handed alpha
Helix 38	AE2	C	45	73	Right-handed alpha
Helix 39	AE3	C	79	90	Right-handed alpha
Helix 40	AE4	C	90	97	Right-handed alpha
Helix 41	AE5	D	37	49	Right-handed alpha
Helix 42	AE6	D	55	84	Right-handed alpha
Helix 43	AE7	D	90	102	Right-handed alpha
Helix 44	AE8	D	104	124	Right-handed alpha
Helix 45	AE9	E	44	55	Right-handed alpha
Helix 46	AF1	E	63	77	Right-handed alpha
Helix 47	AF2	E	85	114	Right-handed alpha
Helix 48	AF3	E	120	132	Right-handed alpha
Helix 49	AF4	F	25	29	Right-handed 310
Helix 50	AF5	F	30	41	Right-handed alpha
Helix 51	AF6	F	49	76	Right-handed alpha
Helix 52	AF7	F	82	93	Right-handed alpha
Helix 53	AF8	G	16	21	Right-handed alpha
Helix 54	AF9	G	26	37	Right-handed alpha
Helix 55	AG1	G	45	73	Right-handed alpha
Helix 56	AG2	G	79	90	Right-handed alpha
Helix 57	AG3	G	90	97	Right-handed alpha
Helix 58	AG4	H	37	49	Right-handed alpha
Helix 59	AG5	H	55	84	Right-handed alpha
Helix 60	AG6	H	90	102	Right-handed alpha
Helix 61	AG7	H	104	124	Right-handed alpha
Helix 62	AG8	K	46	52	Right-handed 310
Helix 63	AG9	K	63	79	Right-handed alpha
Helix 64	AH1	K	85	114	Right-handed alpha
Helix 65	AH2	K	120	132	Right-handed alpha

There are 12 sheets in PDB entry 7VDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	777	first strand
Strand 2	A	906	909	parallel
Strand 3	A	878	881	parallel
Strand 4	A	807	810	parallel
Strand 5	A	855	859	parallel
Strand 6	A	831	833	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	992	996	first strand
Strand 2	A	1200	1204	parallel
Strand 3	A	1170	1173	parallel
Strand 4	A	1099	1103	parallel
Strand 5	A	1151	1155	parallel
Strand 6	A	1123	1126	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1017	1018	first strand
Strand 2	A	1032	1033	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	K	118	119	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	K	83	84	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VDT

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VDT