Analysis of interatomic Contacts of Structural Units in PDB entry:
7VDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VDV entry

There are 10 chains in PDB entry 7VDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 15	GLY 101
C	ALA 12	LYS 118
D	SER 32	ALA 124
E	ARG 40	ARG 134
F	ARG 17	GLY 102
G	ALA 12	LYS 119
H	SER 32	ALA 124
I	G 13	A 147
J	T 1	G 137
A	ARG 167	LEU 1304

There are198 helices in PDB entry 7VDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	25	29	Right-handed 310
Helix 2	AA2	B	30	42	Right-handed alpha
Helix 3	AA3	B	49	76	Right-handed alpha
Helix 4	AA4	B	82	93	Right-handed alpha
Helix 5	AA5	C	16	22	Right-handed alpha
Helix 6	AA6	C	26	37	Right-handed alpha
Helix 7	AA7	C	45	73	Right-handed alpha
Helix 8	AA8	C	79	90	Right-handed alpha
Helix 9	AA9	C	91	97	Right-handed alpha
Helix 10	AB1	D	37	49	Right-handed alpha
Helix 11	AB2	D	55	84	Right-handed alpha
Helix 12	AB3	D	90	102	Right-handed alpha
Helix 13	AB4	D	104	124	Right-handed alpha
Helix 14	AB5	E	44	55	Right-handed alpha
Helix 15	AB6	E	63	77	Right-handed alpha
Helix 16	AB7	E	85	114	Right-handed alpha
Helix 17	AB8	E	120	132	Right-handed alpha
Helix 18	AB9	F	25	29	Right-handed 310
Helix 19	AC1	F	30	41	Right-handed alpha
Helix 20	AC2	F	49	76	Right-handed alpha
Helix 21	AC3	F	82	94	Right-handed alpha
Helix 22	AC4	G	16	22	Right-handed alpha
Helix 23	AC5	G	26	37	Right-handed alpha
Helix 24	AC6	G	45	73	Right-handed alpha
Helix 25	AC7	G	79	90	Right-handed alpha
Helix 26	AC8	G	90	97	Right-handed alpha
Helix 27	AC9	H	37	49	Right-handed alpha
Helix 28	AD1	H	55	84	Right-handed alpha
Helix 29	AD2	H	90	102	Right-handed alpha
Helix 30	AD3	H	103	123	Right-handed alpha
Helix 31	AD4	A	174	193	Right-handed alpha
Helix 32	AD5	A	197	204	Right-handed alpha
Helix 33	AD6	A	363	387	Right-handed alpha
Helix 34	AD7	A	394	423	Right-handed alpha
Helix 35	AD8	A	429	433	Right-handed 310
Helix 36	AD9	A	450	516	Right-handed alpha
Helix 37	AE1	A	545	557	Right-handed alpha
Helix 38	AE2	A	732	736	Right-handed alpha
Helix 39	AE3	A	755	772	Right-handed alpha
Helix 40	AE4	A	784	799	Right-handed alpha
Helix 41	AE5	A	811	825	Right-handed alpha
Helix 42	AE6	A	837	843	Right-handed alpha
Helix 43	AE7	A	844	851	Right-handed alpha
Helix 44	AE8	A	860	866	Right-handed alpha
Helix 45	AE9	A	866	871	Right-handed alpha
Helix 46	AF1	A	882	887	Right-handed 310
Helix 47	AF2	A	891	901	Right-handed alpha
Helix 48	AF3	A	917	929	Right-handed alpha
Helix 49	AF4	A	929	934	Right-handed alpha
Helix 50	AF5	A	962	972	Right-handed alpha
Helix 51	AF6	A	973	976	Right-handed 310
Helix 52	AF7	A	980	985	Right-handed alpha
Helix 53	AF8	A	1001	1014	Right-handed alpha
Helix 54	AF9	A	1037	1048	Right-handed alpha
Helix 55	AG1	A	1049	1052	Right-handed 310
Helix 56	AG2	A	1053	1063	Right-handed alpha
Helix 57	AG3	A	1072	1079	Right-handed alpha
Helix 58	AG4	A	1079	1096	Right-handed alpha
Helix 59	AG5	A	1105	1119	Right-handed alpha
Helix 60	AG6	A	1131	1144	Right-handed alpha
Helix 61	AG7	A	1156	1160	Right-handed alpha
Helix 62	AG8	A	1179	1188	Right-handed alpha
Helix 63	AG9	A	1209	1229	Right-handed alpha
Helix 64	AH1	A	1241	1252	Right-handed alpha
Helix 65	AH2	A	1253	1255	Right-handed 310
Helix 66	AH3	A	1267	1274	Right-handed alpha
Helix 67	AH4	A	1276	1292	Right-handed alpha
Helix 68	AH5	A	1293	1297	Right-handed 310
Helix 69	AH6	A	1306	1309	Right-handed 310
Helix 70	AH7	A	1310	1315	Right-handed alpha
Helix 71	AH8	N	72	77	Right-handed 310
Helix 72	AH9	N	95	110	Right-handed alpha
Helix 73	AI1	N	129	143	Right-handed alpha
Helix 74	AI2	N	153	162	Right-handed alpha
Helix 75	AI3	N	198	213	Right-handed alpha
Helix 76	AI4	N	247	266	Right-handed alpha
Helix 77	AI5	N	299	310	Right-handed 310
Helix 78	AI6	N	324	335	Right-handed alpha
Helix 79	AI7	N	340	347	Right-handed alpha
Helix 80	AI8	N	352	357	Right-handed 310
Helix 81	AI9	N	360	371	Right-handed alpha
Helix 82	AJ1	N	386	390	Right-handed 310
Helix 83	AJ2	N	391	401	Right-handed alpha
Helix 84	AJ3	N	404	409	Right-handed alpha
Helix 85	AJ4	P	3	7	Right-handed alpha
Helix 86	AJ5	P	80	89	Right-handed alpha
Helix 87	AJ6	P	112	125	Right-handed alpha
Helix 88	AJ7	P	137	146	Right-handed alpha
Helix 89	AJ8	P	181	194	Right-handed alpha
Helix 90	AJ9	P	204	216	Right-handed alpha
Helix 91	AK1	P	222	231	Right-handed alpha
Helix 92	AK2	P	252	257	Right-handed alpha
Helix 93	AK3	P	258	262	Right-handed 310
Helix 94	AK4	P	263	268	Right-handed alpha
Helix 95	AK5	P	273	284	Right-handed alpha
Helix 96	AK6	P	289	295	Right-handed alpha
Helix 97	AK7	P	301	305	Right-handed 310
Helix 98	AK8	P	308	321	Right-handed alpha
Helix 99	AK9	P	337	347	Right-handed alpha
Helix 100	AL1	P	352	356	Right-handed 310
Helix 101	AL2	P	359	366	Right-handed alpha
Helix 102	AL3	P	367	371	Right-handed 310
Helix 103	AL4	Q	19	30	Right-handed alpha
Helix 104	AL5	Q	52	57	Right-handed alpha
Helix 105	AL6	Q	59	67	Right-handed alpha
Helix 106	AL7	Q	68	76	Right-handed alpha
Helix 107	AL8	Q	84	104	Right-handed alpha
Helix 108	AL9	Q	132	137	Right-handed 310
Helix 109	AM1	Q	140	147	Right-handed alpha
Helix 110	AM2	Q	158	168	Right-handed alpha
Helix 111	AM3	Q	169	185	Right-handed alpha
Helix 112	AM4	Q	198	208	Right-handed alpha
Helix 113	AM5	Q	222	230	Right-handed alpha
Helix 114	AM6	Q	232	241	Right-handed alpha
Helix 115	AM7	Q	243	251	Right-handed alpha
Helix 116	AM8	Q	280	298	Right-handed alpha
Helix 117	AM9	Q	299	309	Right-handed alpha
Helix 118	AN1	Q	310	321	Right-handed alpha
Helix 119	AN2	Q	324	339	Right-handed alpha
Helix 120	AN3	Q	348	361	Right-handed alpha
Helix 121	AN4	Q	367	382	Right-handed alpha
Helix 122	AN5	Q	389	393	Right-handed 310
Helix 123	AN6	Q	399	406	Right-handed alpha
Helix 124	AN7	Q	411	429	Right-handed alpha
Helix 125	AN8	Q	429	439	Right-handed alpha
Helix 126	AN9	Q	442	452	Right-handed alpha
Helix 127	AO1	Q	460	465	Right-handed 310
Helix 128	AO2	Q	1762	1782	Right-handed alpha
Helix 129	AO3	Q	1783	1791	Right-handed alpha
Helix 130	AO4	Q	1793	1804	Right-handed alpha
Helix 131	AO5	Q	1807	1821	Right-handed alpha
Helix 132	AO6	R	198	219	Right-handed alpha
Helix 133	AO7	R	238	240	Right-handed 310
Helix 134	AO8	R	270	277	Right-handed alpha
Helix 135	AO9	T	134	151	Right-handed alpha
Helix 136	AP1	T	167	172	Right-handed alpha
Helix 137	AP2	T	177	188	Right-handed alpha
Helix 138	AP3	T	192	211	Right-handed alpha
Helix 139	AP4	T	215	220	Right-handed 310
Helix 140	AP5	T	221	232	Right-handed alpha
Helix 141	AP6	T	233	248	Right-handed alpha
Helix 142	AP7	T	369	373	Right-handed 310
Helix 143	AP8	T	422	432	Right-handed alpha
Helix 144	AP9	T	537	566	Right-handed alpha
Helix 145	AQ1	T	579	597	Right-handed alpha
Helix 146	AQ2	V	137	142	Right-handed 310
Helix 147	AQ3	V	159	163	Right-handed 310
Helix 148	AQ4	V	167	171	Right-handed 310
Helix 149	AQ5	V	172	182	Right-handed alpha
Helix 150	AQ6	V	214	227	Right-handed alpha
Helix 151	AQ7	V	229	248	Right-handed alpha
Helix 152	AQ8	V	289	302	Right-handed alpha
Helix 153	AQ9	V	305	326	Right-handed alpha
Helix 154	AR1	V	346	350	Right-handed 310
Helix 155	AR2	V	357	381	Right-handed alpha
Helix 156	AR3	W	439	446	Right-handed alpha
Helix 157	AR4	W	447	451	Right-handed 310
Helix 158	AR5	W	458	476	Right-handed alpha
Helix 159	AR6	W	482	488	Right-handed alpha
Helix 160	AR7	W	493	507	Right-handed alpha
Helix 161	AR8	W	602	617	Right-handed alpha
Helix 162	AR9	W	619	628	Right-handed alpha
Helix 163	AS1	W	631	642	Right-handed alpha
Helix 164	AS2	W	645	649	Right-handed 310
Helix 165	AS3	W	859	949	Right-handed alpha
Helix 166	AS4	X	439	446	Right-handed alpha
Helix 167	AS5	X	446	452	Right-handed alpha
Helix 168	AS6	X	458	474	Right-handed alpha
Helix 169	AS7	X	482	488	Right-handed alpha
Helix 170	AS8	X	493	507	Right-handed alpha
Helix 171	AS9	X	602	614	Right-handed alpha
Helix 172	AT1	X	623	627	Right-handed 310
Helix 173	AT2	X	631	642	Right-handed alpha
Helix 174	AT3	X	869	914	Right-handed alpha
Helix 175	AT4	X	914	947	Right-handed alpha
Helix 176	AT5	Y	134	141	Right-handed alpha
Helix 177	AT6	Y	143	172	Right-handed alpha
Helix 178	AT7	Y	298	306	Right-handed alpha
Helix 179	AT8	Y	311	327	Right-handed alpha
Helix 180	AT9	Y	356	363	Right-handed alpha
Helix 181	AU1	Y	400	413	Right-handed alpha
Helix 182	AU2	Y	415	447	Right-handed alpha
Helix 183	AU3	Y	447	466	Right-handed alpha
Helix 184	AU4	Y	478	484	Right-handed 310
Helix 185	AU5	Y	485	511	Right-handed alpha
Helix 186	AU6	Z	188	197	Right-handed alpha
Helix 187	AU7	Z	198	200	Right-handed 310
Helix 188	AU8	Z	220	276	Right-handed alpha
Helix 189	AU9	a	1601	1616	Right-handed alpha
Helix 190	AV1	a	1626	1633	Right-handed alpha
Helix 191	AV2	a	1642	1647	Right-handed alpha
Helix 192	AV3	a	1649	1653	Right-handed 310
Helix 193	AV4	a	1662	1679	Right-handed alpha
Helix 194	AV5	K	44	55	Right-handed alpha
Helix 195	AV6	K	63	79	Right-handed alpha
Helix 196	AV7	K	85	114	Right-handed alpha
Helix 197	AV8	K	120	132	Right-handed alpha
Helix 198	AV9	M	312	326	Right-handed alpha

There are 28 sheets in PDB entry 7VDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	K	118	119	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	K	83	84	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	Q	517	518	anti-parallel
Strand 3	Q	467	468	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	777	first strand
Strand 2	A	905	909	parallel
Strand 3	A	877	880	parallel
Strand 4	A	807	810	parallel
Strand 5	A	855	859	parallel
Strand 6	A	831	833	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	992	996	first strand
Strand 2	A	1200	1204	parallel
Strand 3	A	1170	1173	parallel
Strand 4	A	1099	1103	parallel
Strand 5	A	1151	1155	parallel
Strand 6	A	1123	1126	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1016	1018	first strand
Strand 2	A	1032	1034	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	35	38	first strand
Strand 2	N	22	27	anti-parallel
Strand 3	N	14	18	anti-parallel
Strand 4	N	120	121	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	41	43	first strand
Strand 2	N	83	85	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	88	89	first strand
Strand 2	N	92	93	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	186	187	first strand
Strand 2	N	177	183	anti-parallel
Strand 3	N	193	195	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	186	187	first strand
Strand 2	N	177	183	anti-parallel
Strand 3	N	167	172	anti-parallel
Strand 4	N	348	351	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	18	21	first strand
Strand 2	P	8	11	anti-parallel
Strand 3	P	103	107	parallel
Strand 4	P	131	136	parallel
Strand 5	P	357	358	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	176	178	first strand
Strand 2	P	160	163	anti-parallel
Strand 3	P	151	155	anti-parallel
Strand 4	P	297	300	parallel
Strand 5	P	329	330	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	238	239	first strand
Strand 2	P	249	250	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	39	40	first strand
Strand 2	Q	43	44	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	225	226	first strand
Strand 2	R	233	236	anti-parallel
Strand 3	X	523	524	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	186	191	first strand
Strand 2	V	202	207	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	194	195	first strand
Strand 2	V	198	199	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	262	270	first strand
Strand 2	V	273	281	anti-parallel
Strand 3	V	352	355	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	296	297	first strand
Strand 2	Y	365	366	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	336	338	first strand
Strand 2	Y	351	353	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VDV