Analysis of interatomic Contacts of Structural Units in PDB entry:
7VDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VDY entry

There are 2 chains in PDB entry 7VDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4LEU 288
B
 PRO 7ALA 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 7VDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 43Right-handed alpha
Helix 2
AA2
A
82 95Right-handed alpha
Helix 3
AA3
A
176 180Right-handed 310
Helix 4
AA4
A
181 192Right-handed alpha
Helix 5
AA5
A
227 241Right-handed alpha
Helix 6
AA6
B
34 43Right-handed alpha
Helix 7
AA7
B
81 95Right-handed alpha
Helix 8
AA8
B
181 192Right-handed alpha
Helix 9
AA9
B
227 241Right-handed alpha
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There are 2 sheets in PDB entry 7VDY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
157 164anti-parallel
Strand 3
A
168 173anti-parallel
Strand 4
A
200 208parallel
Strand 5
A
211 218anti-parallel
Strand 6
A
222 223anti-parallel
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There are 32 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 151first strand
Strand 2
A
157 164anti-parallel
Strand 3
A
168 173anti-parallel
Strand 4
A
200 208parallel
Strand 5
A
211 218anti-parallel
Strand 6
A
247 251parallel
Strand 7
A
256 260anti-parallel
Strand 8
A
269 273anti-parallel
Strand 9
A
121 125anti-parallel
Strand 10
A
110 118anti-parallel
Strand 11
A
102 107anti-parallel
Strand 12
A
66 72parallel
Strand 13
A
52 57anti-parallel
Strand 14
A
20 26parallel
Strand 15
A
10 17anti-parallel
Strand 16
A
275 282anti-parallel
Strand 17
B
275 282anti-parallel
Strand 18
B
10 17anti-parallel
Strand 19
B
20 26anti-parallel
Strand 20
B
52 57parallel
Strand 21
B
66 72anti-parallel
Strand 22
B
102 107parallel
Strand 23
B
110 118anti-parallel
Strand 24
B
121 125anti-parallel
Strand 25
B
269 273anti-parallel
Strand 26
B
255 260anti-parallel
Strand 27
B
247 252anti-parallel
Strand 28
B
211 217parallel
Strand 29
B
200 208anti-parallel
Strand 30
B
168 173parallel
Strand 31
B
157 164anti-parallel
Strand 32
B
148 151anti-parallel
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