Analysis of interatomic Contacts of Structural Units in PDB entry:
7VEB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VEB entry

There are 39 chains in PDB entry 7VEB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 174
B	MET 1	GLY 71
B	ALA 75	ALA 174
C	MET 1	SER 174
D	MET 1	GLY 71
D	ALA 75	ALA 174
E	MET 1	SER 174
F	MET 1	GLY 71
F	ALA 75	ALA 174
G	MET 1	SER 174
H	MET 1	GLY 71
H	ALA 75	ALA 174
I	MET 1	SER 174
J	MET 1	GLY 71
J	ALA 75	ALA 174
K	MET 1	SER 174
L	MET 1	GLY 71
L	ALA 75	ALA 174
M	MET 1	SER 174
N	MET 1	GLY 71
N	ALA 75	ALA 174
O	MET 1	SER 174
P	MET 1	GLY 71
P	ALA 75	ALA 174
Q	MET 1	SER 174
R	MET 1	GLY 71
R	ALA 75	ALA 174
S	MET 1	SER 174
T	MET 1	GLY 71
T	ALA 75	ALA 174
U	MET 1	SER 174
V	MET 1	GLY 71
V	ALA 75	ALA 174
W	MET 1	SER 174
X	MET 1	GLY 71
X	ALA 75	ALA 174
Y	PRO 14	VAL 75
Z	ALA 6	ALA 287
a	THR 2	GLU 186

There are251 helices in PDB entry 7VEB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	20	47	Right-handed alpha
Helix 3	AA3	A	47	63	Right-handed alpha
Helix 4	AA4	A	64	68	Right-handed 310
Helix 5	AA5	A	77	102	Right-handed alpha
Helix 6	AA6	A	104	111	Right-handed alpha
Helix 7	AA7	A	114	122	Right-handed alpha
Helix 8	AA8	A	126	140	Right-handed alpha
Helix 9	AA9	A	145	174	Right-handed alpha
Helix 10	AB1	B	3	16	Right-handed alpha
Helix 11	AB2	B	20	33	Right-handed alpha
Helix 12	AB3	B	33	47	Right-handed alpha
Helix 13	AB4	B	47	63	Right-handed alpha
Helix 14	AB5	B	64	67	Right-handed 310
Helix 15	AB6	B	78	102	Right-handed alpha
Helix 16	AB7	B	104	109	Right-handed alpha
Helix 17	AB8	B	115	123	Right-handed alpha
Helix 18	AB9	B	125	145	Right-handed alpha
Helix 19	AC1	B	155	174	Right-handed alpha
Helix 20	AC2	C	3	16	Right-handed alpha
Helix 21	AC3	C	20	47	Right-handed alpha
Helix 22	AC4	C	47	63	Right-handed alpha
Helix 23	AC5	C	64	68	Right-handed 310
Helix 24	AC6	C	77	102	Right-handed alpha
Helix 25	AC7	C	104	111	Right-handed alpha
Helix 26	AC8	C	114	122	Right-handed alpha
Helix 27	AC9	C	125	140	Right-handed alpha
Helix 28	AD1	C	146	174	Right-handed alpha
Helix 29	AD2	D	3	16	Right-handed alpha
Helix 30	AD3	D	20	33	Right-handed alpha
Helix 31	AD4	D	33	47	Right-handed alpha
Helix 32	AD5	D	47	63	Right-handed alpha
Helix 33	AD6	D	63	68	Right-handed alpha
Helix 34	AD7	D	78	102	Right-handed alpha
Helix 35	AD8	D	104	111	Right-handed alpha
Helix 36	AD9	D	114	123	Right-handed alpha
Helix 37	AE1	D	125	145	Right-handed alpha
Helix 38	AE2	D	155	174	Right-handed alpha
Helix 39	AE3	E	3	16	Right-handed alpha
Helix 40	AE4	E	20	47	Right-handed alpha
Helix 41	AE5	E	47	63	Right-handed alpha
Helix 42	AE6	E	64	68	Right-handed 310
Helix 43	AE7	E	77	102	Right-handed alpha
Helix 44	AE8	E	104	111	Right-handed alpha
Helix 45	AE9	E	114	122	Right-handed alpha
Helix 46	AF1	E	125	140	Right-handed alpha
Helix 47	AF2	E	145	174	Right-handed alpha
Helix 48	AF3	F	3	16	Right-handed alpha
Helix 49	AF4	F	20	33	Right-handed alpha
Helix 50	AF5	F	33	47	Right-handed alpha
Helix 51	AF6	F	47	63	Right-handed alpha
Helix 52	AF7	F	64	67	Right-handed 310
Helix 53	AF8	F	78	102	Right-handed alpha
Helix 54	AF9	F	104	110	Right-handed alpha
Helix 55	AG1	F	114	123	Right-handed alpha
Helix 56	AG2	F	125	146	Right-handed alpha
Helix 57	AG3	F	155	174	Right-handed alpha
Helix 58	AG4	G	3	15	Right-handed alpha
Helix 59	AG5	G	20	47	Right-handed alpha
Helix 60	AG6	G	47	63	Right-handed alpha
Helix 61	AG7	G	64	68	Right-handed 310
Helix 62	AG8	G	77	102	Right-handed alpha
Helix 63	AG9	G	104	111	Right-handed alpha
Helix 64	AH1	G	114	122	Right-handed alpha
Helix 65	AH2	G	125	140	Right-handed alpha
Helix 66	AH3	G	146	174	Right-handed alpha
Helix 67	AH4	H	3	16	Right-handed alpha
Helix 68	AH5	H	20	33	Right-handed alpha
Helix 69	AH6	H	33	47	Right-handed alpha
Helix 70	AH7	H	47	63	Right-handed alpha
Helix 71	AH8	H	64	67	Right-handed 310
Helix 72	AH9	H	78	102	Right-handed alpha
Helix 73	AI1	H	104	111	Right-handed alpha
Helix 74	AI2	H	114	123	Right-handed alpha
Helix 75	AI3	H	125	145	Right-handed alpha
Helix 76	AI4	H	155	174	Right-handed alpha
Helix 77	AI5	I	3	16	Right-handed alpha
Helix 78	AI6	I	20	47	Right-handed alpha
Helix 79	AI7	I	47	63	Right-handed alpha
Helix 80	AI8	I	64	68	Right-handed 310
Helix 81	AI9	I	77	102	Right-handed alpha
Helix 82	AJ1	I	104	111	Right-handed alpha
Helix 83	AJ2	I	114	122	Right-handed alpha
Helix 84	AJ3	I	125	140	Right-handed alpha
Helix 85	AJ4	I	145	174	Right-handed alpha
Helix 86	AJ5	J	3	16	Right-handed alpha
Helix 87	AJ6	J	20	33	Right-handed alpha
Helix 88	AJ7	J	33	47	Right-handed alpha
Helix 89	AJ8	J	47	63	Right-handed alpha
Helix 90	AJ9	J	64	67	Right-handed 310
Helix 91	AK1	J	78	102	Right-handed alpha
Helix 92	AK2	J	104	110	Right-handed alpha
Helix 93	AK3	J	114	123	Right-handed alpha
Helix 94	AK4	J	125	145	Right-handed alpha
Helix 95	AK5	J	155	174	Right-handed alpha
Helix 96	AK6	K	3	15	Right-handed alpha
Helix 97	AK7	K	20	47	Right-handed alpha
Helix 98	AK8	K	47	63	Right-handed alpha
Helix 99	AK9	K	64	68	Right-handed 310
Helix 100	AL1	K	77	102	Right-handed alpha
Helix 101	AL2	K	104	111	Right-handed alpha
Helix 102	AL3	K	114	122	Right-handed alpha
Helix 103	AL4	K	125	139	Right-handed alpha
Helix 104	AL5	K	145	174	Right-handed alpha
Helix 105	AL6	L	3	16	Right-handed alpha
Helix 106	AL7	L	20	33	Right-handed alpha
Helix 107	AL8	L	33	47	Right-handed alpha
Helix 108	AL9	L	47	63	Right-handed alpha
Helix 109	AM1	L	78	102	Right-handed alpha
Helix 110	AM2	L	104	111	Right-handed alpha
Helix 111	AM3	L	114	123	Right-handed alpha
Helix 112	AM4	L	125	146	Right-handed alpha
Helix 113	AM5	L	155	174	Right-handed alpha
Helix 114	AM6	M	3	15	Right-handed alpha
Helix 115	AM7	M	20	47	Right-handed alpha
Helix 116	AM8	M	47	63	Right-handed alpha
Helix 117	AM9	M	64	68	Right-handed 310
Helix 118	AN1	M	77	102	Right-handed alpha
Helix 119	AN2	M	104	111	Right-handed alpha
Helix 120	AN3	M	114	122	Right-handed alpha
Helix 121	AN4	M	125	140	Right-handed alpha
Helix 122	AN5	M	145	174	Right-handed alpha
Helix 123	AN6	N	3	16	Right-handed alpha
Helix 124	AN7	N	20	33	Right-handed alpha
Helix 125	AN8	N	33	47	Right-handed alpha
Helix 126	AN9	N	47	63	Right-handed alpha
Helix 127	AO1	N	64	67	Right-handed 310
Helix 128	AO2	N	78	102	Right-handed alpha
Helix 129	AO3	N	104	110	Right-handed alpha
Helix 130	AO4	N	115	123	Right-handed alpha
Helix 131	AO5	N	125	145	Right-handed alpha
Helix 132	AO6	N	155	174	Right-handed alpha
Helix 133	AO7	O	3	15	Right-handed alpha
Helix 134	AO8	O	20	47	Right-handed alpha
Helix 135	AO9	O	47	63	Right-handed alpha
Helix 136	AP1	O	64	68	Right-handed 310
Helix 137	AP2	O	77	102	Right-handed alpha
Helix 138	AP3	O	104	111	Right-handed alpha
Helix 139	AP4	O	114	123	Right-handed alpha
Helix 140	AP5	O	125	140	Right-handed alpha
Helix 141	AP6	O	146	174	Right-handed alpha
Helix 142	AP7	P	3	16	Right-handed alpha
Helix 143	AP8	P	20	33	Right-handed alpha
Helix 144	AP9	P	33	47	Right-handed alpha
Helix 145	AQ1	P	47	63	Right-handed alpha
Helix 146	AQ2	P	64	67	Right-handed 310
Helix 147	AQ3	P	78	102	Right-handed alpha
Helix 148	AQ4	P	104	111	Right-handed alpha
Helix 149	AQ5	P	114	123	Right-handed alpha
Helix 150	AQ6	P	125	146	Right-handed alpha
Helix 151	AQ7	P	155	174	Right-handed alpha
Helix 152	AQ8	Q	3	16	Right-handed alpha
Helix 153	AQ9	Q	20	47	Right-handed alpha
Helix 154	AR1	Q	49	63	Right-handed alpha
Helix 155	AR2	Q	64	67	Right-handed 310
Helix 156	AR3	Q	77	102	Right-handed alpha
Helix 157	AR4	Q	104	111	Right-handed alpha
Helix 158	AR5	Q	114	122	Right-handed alpha
Helix 159	AR6	Q	125	140	Right-handed alpha
Helix 160	AR7	Q	145	174	Right-handed alpha
Helix 161	AR8	R	3	16	Right-handed alpha
Helix 162	AR9	R	20	33	Right-handed alpha
Helix 163	AS1	R	33	47	Right-handed alpha
Helix 164	AS2	R	47	63	Right-handed alpha
Helix 165	AS3	R	64	67	Right-handed 310
Helix 166	AS4	R	78	102	Right-handed alpha
Helix 167	AS5	R	104	111	Right-handed alpha
Helix 168	AS6	R	114	123	Right-handed alpha
Helix 169	AS7	R	125	146	Right-handed alpha
Helix 170	AS8	R	155	174	Right-handed alpha
Helix 171	AS9	S	3	15	Right-handed alpha
Helix 172	AT1	S	20	47	Right-handed alpha
Helix 173	AT2	S	47	63	Right-handed alpha
Helix 174	AT3	S	64	69	Right-handed alpha
Helix 175	AT4	S	77	102	Right-handed alpha
Helix 176	AT5	S	104	111	Right-handed alpha
Helix 177	AT6	S	114	122	Right-handed alpha
Helix 178	AT7	S	125	140	Right-handed alpha
Helix 179	AT8	S	145	174	Right-handed alpha
Helix 180	AT9	T	3	16	Right-handed alpha
Helix 181	AU1	T	20	33	Right-handed alpha
Helix 182	AU2	T	33	47	Right-handed alpha
Helix 183	AU3	T	47	63	Right-handed alpha
Helix 184	AU4	T	63	68	Right-handed alpha
Helix 185	AU5	T	77	102	Right-handed alpha
Helix 186	AU6	T	104	110	Right-handed alpha
Helix 187	AU7	T	114	123	Right-handed alpha
Helix 188	AU8	T	125	145	Right-handed alpha
Helix 189	AU9	T	155	174	Right-handed alpha
Helix 190	AV1	U	3	15	Right-handed alpha
Helix 191	AV2	U	20	47	Right-handed alpha
Helix 192	AV3	U	47	63	Right-handed alpha
Helix 193	AV4	U	64	68	Right-handed 310
Helix 194	AV5	U	77	102	Right-handed alpha
Helix 195	AV6	U	104	111	Right-handed alpha
Helix 196	AV7	U	114	122	Right-handed alpha
Helix 197	AV8	U	125	140	Right-handed alpha
Helix 198	AV9	U	146	174	Right-handed alpha
Helix 199	AW1	V	3	16	Right-handed alpha
Helix 200	AW2	V	20	33	Right-handed alpha
Helix 201	AW3	V	33	47	Right-handed alpha
Helix 202	AW4	V	47	63	Right-handed alpha
Helix 203	AW5	V	64	67	Right-handed 310
Helix 204	AW6	V	79	102	Right-handed alpha
Helix 205	AW7	V	104	110	Right-handed alpha
Helix 206	AW8	V	114	123	Right-handed alpha
Helix 207	AW9	V	125	146	Right-handed alpha
Helix 208	AX1	V	155	174	Right-handed alpha
Helix 209	AX2	W	3	16	Right-handed alpha
Helix 210	AX3	W	20	47	Right-handed alpha
Helix 211	AX4	W	47	63	Right-handed alpha
Helix 212	AX5	W	63	69	Right-handed alpha
Helix 213	AX6	W	77	102	Right-handed alpha
Helix 214	AX7	W	104	111	Right-handed alpha
Helix 215	AX8	W	114	122	Right-handed alpha
Helix 216	AX9	W	125	140	Right-handed alpha
Helix 217	AY1	W	145	174	Right-handed alpha
Helix 218	AY2	X	3	16	Right-handed alpha
Helix 219	AY3	X	20	33	Right-handed alpha
Helix 220	AY4	X	33	47	Right-handed alpha
Helix 221	AY5	X	47	63	Right-handed alpha
Helix 222	AY6	X	64	67	Right-handed 310
Helix 223	AY7	X	76	102	Right-handed alpha
Helix 224	AY8	X	104	111	Right-handed alpha
Helix 225	AY9	X	114	123	Right-handed alpha
Helix 226	AZ1	X	125	145	Right-handed alpha
Helix 227	AZ2	X	155	174	Right-handed alpha
Helix 228	AZ3	Y	54	66	Right-handed alpha
Helix 229	AZ4	Z	30	44	Right-handed alpha
Helix 230	AZ5	Z	50	54	Right-handed 310
Helix 231	AZ6	Z	55	65	Right-handed alpha
Helix 232	AZ7	Z	68	79	Right-handed alpha
Helix 233	AZ8	Z	79	86	Right-handed alpha
Helix 234	AZ9	Z	91	104	Right-handed alpha
Helix 235	BA1	Z	110	124	Right-handed alpha
Helix 236	BA2	Z	125	136	Right-handed alpha
Helix 237	BA3	Z	136	143	Right-handed alpha
Helix 238	BA4	Z	162	172	Right-handed alpha
Helix 239	BA5	Z	191	197	Right-handed alpha
Helix 240	BA6	Z	217	221	Right-handed 310
Helix 241	BA7	Z	266	278	Right-handed alpha
Helix 242	BA8	a	38	54	Right-handed alpha
Helix 243	BA9	a	65	72	Right-handed alpha
Helix 244	BB1	a	78	89	Right-handed alpha
Helix 245	BB2	a	89	96	Right-handed alpha
Helix 246	BB3	a	101	113	Right-handed alpha
Helix 247	BB4	a	120	135	Right-handed alpha
Helix 248	BB5	a	135	145	Right-handed alpha
Helix 249	BB6	a	146	154	Right-handed alpha
Helix 250	BB7	a	169	174	Right-handed alpha
Helix 251	BB8	a	180	185	Right-handed 310

There are 2 sheets in PDB entry 7VEB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	46	50	first strand
Strand 2	Y	20	24	anti-parallel
Strand 3	Y	69	74	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	258	263	first strand
Strand 2	Z	237	242	anti-parallel
Strand 3	Z	284	286	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VEB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VEB