Analysis of interatomic Contacts of Structural Units in PDB entry:
7VEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VEE entry

There is 1 chain in PDB entry 7VEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24GLU 919
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 7VEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 53Right-handed alpha
Helix 2
AA2
A
97 101Right-handed 310
Helix 3
AA3
A
103 110Right-handed alpha
Helix 4
AA4
A
111 129Right-handed alpha
Helix 5
AA5
A
131 136Right-handed 310
Helix 6
AA6
A
149 158Right-handed alpha
Helix 7
AA7
A
166 172Right-handed alpha
Helix 8
AA8
A
174 184Right-handed alpha
Helix 9
AA9
A
195 197Right-handed 310
Helix 10
AB1
A
198 213Right-handed alpha
Helix 11
AB2
A
229 240Right-handed alpha
Helix 12
AB3
A
272 279Right-handed alpha
Helix 13
AB4
A
304 320Right-handed alpha
Helix 14
AB5
A
338 351Right-handed alpha
Helix 15
AB6
A
364 369Right-handed alpha
Helix 16
AB7
A
371 373Right-handed 310
Helix 17
AB8
A
374 390Right-handed alpha
Helix 18
AB9
A
406 411Right-handed alpha
Helix 19
AC1
A
484 501Right-handed alpha
Helix 20
AC2
A
501 506Right-handed alpha
Helix 21
AC3
A
508 519Right-handed alpha
Helix 22
AC4
A
533 545Right-handed alpha
Helix 23
AC5
A
577 584Right-handed alpha
Helix 24
AC6
A
584 605Right-handed alpha
Helix 25
AC7
A
614 621Right-handed alpha
Helix 26
AC8
A
625 628Right-handed 310
Helix 27
AC9
A
629 651Right-handed alpha
Helix 28
AD1
A
663 672Right-handed alpha
Helix 29
AD2
A
676 693Right-handed alpha
Helix 30
AD3
A
706 715Right-handed alpha
Helix 31
AD4
A
738 751Right-handed alpha
Helix 32
AD5
A
766 768Right-handed 310
Helix 33
AD6
A
769 781Right-handed alpha
Helix 34
AD7
A
802 807Right-handed alpha
Helix 35
AD8
A
808 818Right-handed alpha
Helix 36
AD9
A
821 832Right-handed alpha
Helix 37
AE1
A
844 854Right-handed alpha
Helix 38
AE2
A
871 886Right-handed alpha
Helix 39
AE3
A
891 896Right-handed 310
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There are 6 sheets in PDB entry 7VEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
141 145parallel
Strand 3
A
219 225parallel
Strand 4
A
263 271anti-parallel
Strand 5
A
29 37anti-parallel
Strand 6
A
284 293anti-parallel
Strand 7
A
443 450anti-parallel
Strand 8
A
432 438anti-parallel
Strand 9
A
328 330parallel
Strand 10
A
359 362parallel
Strand 11
A
412 414parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
85 87anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
914 915anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 482first strand
Strand 2
A
525 531anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
800 801first strand
Strand 2
A
791 793anti-parallel
Strand 3
A
657 660parallel
Strand 4
A
561 566parallel
Strand 5
A
834 840parallel
Strand 6
A
862 864parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 728first strand
Strand 2
A
731 737anti-parallel
Strand 3
A
698 703anti-parallel
Strand 4
A
755 757anti-parallel
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