Analysis of interatomic Contacts of Structural Units in PDB entry:
7VEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VEK entry

There are 2 chains in PDB entry 7VEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7HIS 484
B
 GLN 6ALA 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7VEK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 34Right-handed alpha
Helix 2
AA2
A
46 55Right-handed alpha
Helix 3
AA3
A
90 104Right-handed alpha
Helix 4
AA4
A
105 117Right-handed alpha
Helix 5
AA5
A
129 136Right-handed alpha
Helix 6
AA6
A
148 162Right-handed alpha
Helix 7
AA7
A
163 166Right-handed 310
Helix 8
AA8
A
188 190Right-handed 310
Helix 9
AA9
A
191 196Right-handed alpha
Helix 10
AB1
A
199 216Right-handed alpha
Helix 11
AB2
A
228 237Right-handed alpha
Helix 12
AB3
A
250 254Right-handed 310
Helix 13
AB4
A
272 279Right-handed alpha
Helix 14
AB5
A
297 312Right-handed alpha
Helix 15
AB6
A
337 342Right-handed alpha
Helix 16
AB7
A
354 360Right-handed alpha
Helix 17
AB8
A
372 383Right-handed alpha
Helix 18
AB9
A
394 404Right-handed alpha
Helix 19
AC1
A
422 426Right-handed 310
Helix 20
AC2
A
428 441Right-handed alpha
Helix 21
AC3
A
444 464Right-handed alpha
Helix 22
AC4
A
467 482Right-handed alpha
Helix 23
AC5
B
17 34Right-handed alpha
Helix 24
AC6
B
46 54Right-handed alpha
Helix 25
AC7
B
73 78Right-handed alpha
Helix 26
AC8
B
91 104Right-handed alpha
Helix 27
AC9
B
105 117Right-handed alpha
Helix 28
AD1
B
129 136Right-handed alpha
Helix 29
AD2
B
148 162Right-handed alpha
Helix 30
AD3
B
163 166Right-handed 310
Helix 31
AD4
B
188 190Right-handed 310
Helix 32
AD5
B
191 196Right-handed alpha
Helix 33
AD6
B
200 216Right-handed alpha
Helix 34
AD7
B
228 237Right-handed alpha
Helix 35
AD8
B
271 279Right-handed alpha
Helix 36
AD9
B
297 312Right-handed alpha
Helix 37
AE1
B
337 342Right-handed alpha
Helix 38
AE2
B
354 360Right-handed alpha
Helix 39
AE3
B
372 382Right-handed alpha
Helix 40
AE4
B
394 404Right-handed alpha
Helix 41
AE5
B
422 426Right-handed 310
Helix 42
AE6
B
428 442Right-handed alpha
Helix 43
AE7
B
444 464Right-handed alpha
Helix 44
AE8
B
467 482Right-handed alpha
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There are 6 sheets in PDB entry 7VEK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
37 42parallel
Strand 3
A
9 13parallel
Strand 4
A
120 124parallel
Strand 5
A
141 144parallel
Strand 6
A
218 221parallel
Strand 7
A
243 245parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
184 186anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
314 318parallel
Strand 3
A
285 288parallel
Strand 4
A
364 369parallel
Strand 5
A
386 388parallel
Strand 6
A
409 411parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 69first strand
Strand 2
B
36 42parallel
Strand 3
B
8 13parallel
Strand 4
B
120 124parallel
Strand 5
B
141 144parallel
Strand 6
B
218 221parallel
Strand 7
B
243 245parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 175first strand
Strand 2
B
184 186anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 349first strand
Strand 2
B
314 318parallel
Strand 3
B
285 288parallel
Strand 4
B
364 369parallel
Strand 5
B
386 388parallel
Strand 6
B
409 411parallel
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