Analysis of interatomic Contacts of Structural Units in PDB entry:
7VEM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VEM entry

There are 2 chains in PDB entry 7VEM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASP 348
B
 THR 3LYS 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7VEM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
43 52Right-handed alpha
Helix 3
AA3
A
138 145Right-handed alpha
Helix 4
AA4
A
147 158Right-handed alpha
Helix 5
AA5
A
174 187Right-handed alpha
Helix 6
AA6
A
197 209Right-handed alpha
Helix 7
AA7
A
221 229Right-handed alpha
Helix 8
AA8
A
243 253Right-handed alpha
Helix 9
AA9
A
270 274Right-handed 310
Helix 10
AB1
A
276 285Right-handed alpha
Helix 11
AB2
A
295 309Right-handed alpha
Helix 12
AB3
A
322 336Right-handed alpha
Helix 13
AB4
B
14 18Right-handed 310
Helix 14
AB5
B
43 51Right-handed alpha
Helix 15
AB6
B
138 145Right-handed alpha
Helix 16
AB7
B
147 158Right-handed alpha
Helix 17
AB8
B
174 187Right-handed alpha
Helix 18
AB9
B
197 209Right-handed alpha
Helix 19
AC1
B
221 230Right-handed alpha
Helix 20
AC2
B
242 245Right-handed 310
Helix 21
AC3
B
246 253Right-handed alpha
Helix 22
AC4
B
276 285Right-handed alpha
Helix 23
AC5
B
295 309Right-handed alpha
Helix 24
AC6
B
322 336Right-handed alpha
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There are 7 sheets in PDB entry 7VEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
19 24anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
68 76anti-parallel
Strand 4
A
88 91anti-parallel
Strand 5
A
128 130anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
341 345anti-parallel
Strand 4
A
315 319parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
190 195parallel
Strand 3
A
167 170parallel
Strand 4
A
235 240parallel
Strand 5
A
254 262parallel
Strand 6
A
287 290parallel
Strand 7
B
287 290anti-parallel
Strand 8
B
254 262parallel
Strand 9
B
235 240parallel
Strand 10
B
167 171parallel
Strand 11
B
190 195parallel
Strand 12
B
212 215parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
19 23anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
32 41anti-parallel
Strand 3
B
68 76anti-parallel
Strand 4
B
88 91anti-parallel
Strand 5
B
128 130anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
32 41anti-parallel
Strand 3
B
341 344anti-parallel
Strand 4
B
315 319parallel
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