Analysis of interatomic Contacts of Structural Units in PDB entry:
7VEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VEV entry

There is 1 chain in PDB entry 7VEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 613
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 7VEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
17 22Right-handed alpha
Helix 3
AA3
A
52 60Right-handed alpha
Helix 4
AA4
A
108 119Right-handed alpha
Helix 5
AA5
A
130 134Right-handed 310
Helix 6
AA6
A
160 165Right-handed alpha
Helix 7
AA7
A
166 175Right-handed 310
Helix 8
AA8
A
177 182Right-handed alpha
Helix 9
AA9
A
183 185Right-handed 310
Helix 10
AB1
A
193 200Right-handed alpha
Helix 11
AB2
A
203 212Right-handed alpha
Helix 12
AB3
A
217 222Right-handed 310
Helix 13
AB4
A
276 286Right-handed alpha
Helix 14
AB5
A
299 301Right-handed 310
Helix 15
AB6
A
302 309Right-handed alpha
Helix 16
AB7
A
309 314Right-handed alpha
Helix 17
AB8
A
338 346Right-handed alpha
Helix 18
AB9
A
347 357Right-handed alpha
Helix 19
AC1
A
359 369Right-handed alpha
Helix 20
AC2
A
387 393Right-handed alpha
Helix 21
AC3
A
398 409Right-handed alpha
Helix 22
AC4
A
438 454Right-handed alpha
Helix 23
AC5
A
465 475Right-handed alpha
Helix 24
AC6
A
509 518Right-handed alpha
Helix 25
AC7
A
527 542Right-handed alpha
Helix 26
AC8
A
545 564Right-handed alpha
Helix 27
AC9
A
593 597Right-handed 310
Helix 28
AD1
A
599 607Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 7VEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
255 256parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 47first strand
Strand 2
A
268 274parallel
Strand 3
A
244 249anti-parallel
Strand 4
A
232 236anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
74 76anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
141 146anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
575 580anti-parallel
Strand 3
A
315 320anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 464first strand
Strand 2
A
429 435parallel
Strand 3
A
480 485parallel
Strand 4
A
326 332anti-parallel
Strand 5
A
566 567anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
570 571anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 584first strand
Strand 2
A
608 609anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il