Analysis of interatomic Contacts of Structural Units in PDB entry:
7VEW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VEW entry

There are 2 chains in PDB entry 7VEW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	SER 610
B	ALA 2	SER 610

There are 57 helices in PDB entry 7VEW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed 310
Helix 2	AA2	A	17	22	Right-handed alpha
Helix 3	AA3	A	52	60	Right-handed alpha
Helix 4	AA4	A	108	118	Right-handed alpha
Helix 5	AA5	A	130	134	Right-handed 310
Helix 6	AA6	A	160	166	Right-handed alpha
Helix 7	AA7	A	167	175	Right-handed 310
Helix 8	AA8	A	177	182	Right-handed alpha
Helix 9	AA9	A	183	185	Right-handed 310
Helix 10	AB1	A	191	194	Right-handed 310
Helix 11	AB2	A	195	200	Right-handed alpha
Helix 12	AB3	A	203	213	Right-handed alpha
Helix 13	AB4	A	217	222	Right-handed 310
Helix 14	AB5	A	276	286	Right-handed alpha
Helix 15	AB6	A	299	301	Right-handed 310
Helix 16	AB7	A	302	309	Right-handed alpha
Helix 17	AB8	A	309	314	Right-handed alpha
Helix 18	AB9	A	338	346	Right-handed alpha
Helix 19	AC1	A	347	357	Right-handed alpha
Helix 20	AC2	A	359	369	Right-handed alpha
Helix 21	AC3	A	387	393	Right-handed alpha
Helix 22	AC4	A	398	409	Right-handed alpha
Helix 23	AC5	A	438	454	Right-handed alpha
Helix 24	AC6	A	465	475	Right-handed alpha
Helix 25	AC7	A	509	518	Right-handed alpha
Helix 26	AC8	A	527	542	Right-handed alpha
Helix 27	AC9	A	545	564	Right-handed alpha
Helix 28	AD1	A	593	597	Right-handed 310
Helix 29	AD2	A	599	607	Right-handed 310
Helix 30	AD3	B	6	12	Right-handed 310
Helix 31	AD4	B	17	22	Right-handed alpha
Helix 32	AD5	B	52	60	Right-handed alpha
Helix 33	AD6	B	108	118	Right-handed alpha
Helix 34	AD7	B	130	134	Right-handed 310
Helix 35	AD8	B	160	166	Right-handed alpha
Helix 36	AD9	B	167	175	Right-handed 310
Helix 37	AE1	B	177	182	Right-handed alpha
Helix 38	AE2	B	183	185	Right-handed 310
Helix 39	AE3	B	193	200	Right-handed alpha
Helix 40	AE4	B	203	212	Right-handed alpha
Helix 41	AE5	B	217	222	Right-handed 310
Helix 42	AE6	B	276	286	Right-handed alpha
Helix 43	AE7	B	299	301	Right-handed 310
Helix 44	AE8	B	302	309	Right-handed alpha
Helix 45	AE9	B	309	314	Right-handed alpha
Helix 46	AF1	B	338	346	Right-handed alpha
Helix 47	AF2	B	347	357	Right-handed alpha
Helix 48	AF3	B	359	369	Right-handed alpha
Helix 49	AF4	B	387	393	Right-handed alpha
Helix 50	AF5	B	398	409	Right-handed alpha
Helix 51	AF6	B	438	454	Right-handed alpha
Helix 52	AF7	B	465	475	Right-handed alpha
Helix 53	AF8	B	509	518	Right-handed alpha
Helix 54	AF9	B	527	542	Right-handed alpha
Helix 55	AG1	B	545	564	Right-handed alpha
Helix 56	AG2	B	593	597	Right-handed 310
Helix 57	AG3	B	599	607	Right-handed 310

There are 16 sheets in PDB entry 7VEW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	255	256	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	268	274	parallel
Strand 3	A	244	249	anti-parallel
Strand 4	A	232	236	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	74	76	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	149	153	anti-parallel
Strand 4	A	141	146	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	292	first strand
Strand 2	A	575	580	anti-parallel
Strand 3	A	315	320	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	567	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	480	485	anti-parallel
Strand 4	A	429	435	parallel
Strand 5	A	458	464	parallel
Strand 6	B	458	464	anti-parallel
Strand 7	B	429	435	parallel
Strand 8	B	480	485	parallel
Strand 9	B	326	332	anti-parallel
Strand 10	B	566	567	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	A	570	571	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	414	first strand
Strand 2	A	420	421	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	584	first strand
Strand 2	A	608	609	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	255	256	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	47	first strand
Strand 2	B	268	274	parallel
Strand 3	B	244	249	anti-parallel
Strand 4	B	232	236	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	74	76	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	149	153	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	575	580	anti-parallel
Strand 3	B	315	320	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	374	first strand
Strand 2	B	570	571	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	584	first strand
Strand 2	B	608	609	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VEW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VEW