Analysis of interatomic Contacts of Structural Units in PDB entry:
7VF3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VF3 entry

There are 4 chains in PDB entry 7VF3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 24	LEU 534
B	CYS 100	CYS 114
C	PRO 24	LEU 534
D	CYS 100	CYS 114

There are 20 helices in PDB entry 7VF3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	114	117	Right-handed 310
Helix 2	AA2	A	138	142	Right-handed 310
Helix 3	AA3	A	193	197	Right-handed 310
Helix 4	AA4	A	210	215	Right-handed alpha
Helix 5	AA5	A	270	272	Right-handed 310
Helix 6	AA6	A	326	343	Right-handed alpha
Helix 7	AA7	A	370	375	Right-handed alpha
Helix 8	AA8	A	481	485	Right-handed 310
Helix 9	AA9	A	487	494	Right-handed alpha
Helix 10	AB1	A	510	514	Right-handed 310
Helix 11	AB2	B	106	114	Right-handed alpha
Helix 12	AB3	C	114	117	Right-handed 310
Helix 13	AB4	C	138	142	Right-handed 310
Helix 14	AB5	C	193	197	Right-handed 310
Helix 15	AB6	C	210	215	Right-handed alpha
Helix 16	AB7	C	326	343	Right-handed alpha
Helix 17	AB8	C	370	375	Right-handed alpha
Helix 18	AB9	C	487	494	Right-handed alpha
Helix 19	AC1	C	510	514	Right-handed 310
Helix 20	AC2	D	106	114	Right-handed alpha

There are 20 sheets in PDB entry 7VF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	474	478	anti-parallel
Strand 3	A	465	469	anti-parallel
Strand 4	A	458	459	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	47	51	anti-parallel
Strand 3	A	54	58	anti-parallel
Strand 4	A	64	69	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	92	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	103	first strand
Strand 2	A	108	112	anti-parallel
Strand 3	A	119	123	anti-parallel
Strand 4	A	126	132	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	158	first strand
Strand 2	A	164	170	anti-parallel
Strand 3	A	184	188	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	224	first strand
Strand 2	A	227	235	anti-parallel
Strand 3	A	244	252	anti-parallel
Strand 4	A	262	268	anti-parallel
Strand 5	A	386	388	parallel
Strand 6	A	354	356	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	224	first strand
Strand 2	A	227	235	anti-parallel
Strand 3	A	244	252	anti-parallel
Strand 4	A	262	268	anti-parallel
Strand 5	A	392	394	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	282	first strand
Strand 2	A	292	298	anti-parallel
Strand 3	A	318	325	anti-parallel
Strand 4	A	398	401	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	413	first strand
Strand 2	A	416	423	anti-parallel
Strand 3	A	427	432	anti-parallel
Strand 4	A	443	446	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	509	first strand
Strand 2	A	500	502	anti-parallel
Strand 3	A	523	525	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	474	478	anti-parallel
Strand 3	C	465	469	anti-parallel
Strand 4	C	458	459	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	40	first strand
Strand 2	C	47	51	anti-parallel
Strand 3	C	54	58	anti-parallel
Strand 4	C	64	69	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	75	first strand
Strand 2	C	92	94	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	104	first strand
Strand 2	C	107	112	anti-parallel
Strand 3	C	119	123	anti-parallel
Strand 4	C	126	132	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	158	first strand
Strand 2	C	164	170	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	200	205	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	224	first strand
Strand 2	C	227	235	anti-parallel
Strand 3	C	244	252	anti-parallel
Strand 4	C	262	268	anti-parallel
Strand 5	C	386	388	parallel
Strand 6	C	354	356	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	224	first strand
Strand 2	C	227	235	anti-parallel
Strand 3	C	244	252	anti-parallel
Strand 4	C	262	268	anti-parallel
Strand 5	C	392	394	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	282	first strand
Strand 2	C	292	298	anti-parallel
Strand 3	C	318	325	anti-parallel
Strand 4	C	398	401	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	413	first strand
Strand 2	C	416	423	anti-parallel
Strand 3	C	427	432	anti-parallel
Strand 4	C	443	446	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	507	509	first strand
Strand 2	C	500	502	anti-parallel
Strand 3	C	523	525	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VF3

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VF3