Analysis of interatomic Contacts of Structural Units in PDB entry:
7VF4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VF4 entry

There are 8 chains in PDB entry 7VF4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 6	PRO 226
B	LYS 4	PRO 226
C	GLU 6	LEU 227
D	GLU 6	SER 225
E	GLY 7	PRO 226
F	THR 2	PRO 226
G	LYS 8	PRO 226
H	GLY 7	PRO 226

There are 89 helices in PDB entry 7VF4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	51	Right-handed alpha
Helix 2	AA2	A	55	64	Right-handed alpha
Helix 3	AA3	A	64	71	Right-handed alpha
Helix 4	AA4	A	72	74	Right-handed 310
Helix 5	AA5	A	75	80	Right-handed alpha
Helix 6	AA6	A	89	93	Right-handed 310
Helix 7	AA7	A	145	151	Right-handed 310
Helix 8	AA8	A	152	160	Right-handed alpha
Helix 9	AA9	A	169	182	Right-handed alpha
Helix 10	AB1	A	183	189	Right-handed 310
Helix 11	AB2	A	200	211	Right-handed alpha
Helix 12	AB3	A	215	224	Right-handed alpha
Helix 13	AB4	B	6	51	Right-handed alpha
Helix 14	AB5	B	55	64	Right-handed alpha
Helix 15	AB6	B	64	70	Right-handed alpha
Helix 16	AB7	B	72	80	Right-handed alpha
Helix 17	AB8	B	145	151	Right-handed 310
Helix 18	AB9	B	152	160	Right-handed alpha
Helix 19	AC1	B	169	181	Right-handed alpha
Helix 20	AC2	B	182	189	Right-handed 310
Helix 21	AC3	B	200	211	Right-handed alpha
Helix 22	AC4	B	215	224	Right-handed alpha
Helix 23	AC5	C	7	51	Right-handed alpha
Helix 24	AC6	C	55	64	Right-handed alpha
Helix 25	AC7	C	64	71	Right-handed alpha
Helix 26	AC8	C	72	80	Right-handed 310
Helix 27	AC9	C	89	93	Right-handed 310
Helix 28	AD1	C	145	151	Right-handed 310
Helix 29	AD2	C	152	160	Right-handed alpha
Helix 30	AD3	C	164	168	Right-handed 310
Helix 31	AD4	C	169	181	Right-handed alpha
Helix 32	AD5	C	182	189	Right-handed 310
Helix 33	AD6	C	200	211	Right-handed alpha
Helix 34	AD7	C	215	224	Right-handed alpha
Helix 35	AD8	D	8	51	Right-handed alpha
Helix 36	AD9	D	55	64	Right-handed alpha
Helix 37	AE1	D	64	71	Right-handed alpha
Helix 38	AE2	D	72	80	Right-handed alpha
Helix 39	AE3	D	89	94	Right-handed 310
Helix 40	AE4	D	148	151	Right-handed 310
Helix 41	AE5	D	152	160	Right-handed alpha
Helix 42	AE6	D	169	181	Right-handed alpha
Helix 43	AE7	D	182	189	Right-handed 310
Helix 44	AE8	D	200	211	Right-handed alpha
Helix 45	AE9	D	215	224	Right-handed alpha
Helix 46	AF1	E	8	51	Right-handed alpha
Helix 47	AF2	E	55	64	Right-handed alpha
Helix 48	AF3	E	64	71	Right-handed alpha
Helix 49	AF4	E	72	80	Right-handed alpha
Helix 50	AF5	E	89	93	Right-handed 310
Helix 51	AF6	E	145	151	Right-handed 310
Helix 52	AF7	E	152	160	Right-handed alpha
Helix 53	AF8	E	169	181	Right-handed alpha
Helix 54	AF9	E	182	189	Right-handed 310
Helix 55	AG1	E	200	211	Right-handed alpha
Helix 56	AG2	E	215	224	Right-handed alpha
Helix 57	AG3	F	6	51	Right-handed alpha
Helix 58	AG4	F	55	64	Right-handed alpha
Helix 59	AG5	F	64	70	Right-handed alpha
Helix 60	AG6	F	71	74	Right-handed 310
Helix 61	AG7	F	75	80	Right-handed alpha
Helix 62	AG8	F	89	94	Right-handed 310
Helix 63	AG9	F	145	149	Right-handed 310
Helix 64	AH1	F	152	160	Right-handed alpha
Helix 65	AH2	F	169	181	Right-handed alpha
Helix 66	AH3	F	182	189	Right-handed 310
Helix 67	AH4	F	200	211	Right-handed alpha
Helix 68	AH5	F	215	224	Right-handed alpha
Helix 69	AH6	G	9	51	Right-handed alpha
Helix 70	AH7	G	55	64	Right-handed alpha
Helix 71	AH8	G	64	71	Right-handed alpha
Helix 72	AH9	G	72	80	Right-handed 310
Helix 73	AI1	G	89	93	Right-handed 310
Helix 74	AI2	G	145	151	Right-handed 310
Helix 75	AI3	G	152	160	Right-handed alpha
Helix 76	AI4	G	169	181	Right-handed alpha
Helix 77	AI5	G	182	189	Right-handed 310
Helix 78	AI6	G	200	211	Right-handed alpha
Helix 79	AI7	G	215	224	Right-handed alpha
Helix 80	AI8	H	8	51	Right-handed alpha
Helix 81	AI9	H	55	64	Right-handed alpha
Helix 82	AJ1	H	64	71	Right-handed alpha
Helix 83	AJ2	H	72	80	Right-handed 310
Helix 84	AJ3	H	145	151	Right-handed 310
Helix 85	AJ4	H	152	160	Right-handed alpha
Helix 86	AJ5	H	169	182	Right-handed alpha
Helix 87	AJ6	H	183	189	Right-handed 310
Helix 88	AJ7	H	200	211	Right-handed alpha
Helix 89	AJ8	H	215	225	Right-handed alpha

There are 8 sheets in PDB entry 7VF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	88	first strand
Strand 2	A	102	108	anti-parallel
Strand 3	A	117	127	anti-parallel
Strand 4	A	133	137	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	88	first strand
Strand 2	B	102	108	anti-parallel
Strand 3	B	118	127	anti-parallel
Strand 4	B	133	137	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	88	first strand
Strand 2	C	102	108	anti-parallel
Strand 3	C	117	127	anti-parallel
Strand 4	C	133	137	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	88	first strand
Strand 2	D	102	108	anti-parallel
Strand 3	D	117	127	anti-parallel
Strand 4	D	133	137	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	88	first strand
Strand 2	E	102	108	anti-parallel
Strand 3	E	117	127	anti-parallel
Strand 4	E	133	137	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	88	first strand
Strand 2	F	102	108	anti-parallel
Strand 3	F	117	127	anti-parallel
Strand 4	F	133	137	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	82	88	first strand
Strand 2	G	102	108	anti-parallel
Strand 3	G	117	127	anti-parallel
Strand 4	G	133	137	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	82	88	first strand
Strand 2	H	102	108	anti-parallel
Strand 3	H	117	127	anti-parallel
Strand 4	H	133	137	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VF4

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VF4