Analysis of interatomic Contacts of Structural Units in PDB entry:
7VF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VF5 entry

There are 3 chains in PDB entry 7VF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 333THR 1585
C
 GLN 64SER 247
D
 GLN 64SER 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 7VF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
357 369Right-handed alpha
Helix 2
AA2
A
373 392Right-handed alpha
Helix 3
AA3
A
397 405Right-handed alpha
Helix 4
AA4
A
406 421Right-handed alpha
Helix 5
AA5
A
426 440Right-handed alpha
Helix 6
AA6
A
440 445Right-handed alpha
Helix 7
AA7
A
451 468Right-handed alpha
Helix 8
AA8
A
469 480Right-handed alpha
Helix 9
AA9
A
482 491Right-handed alpha
Helix 10
AB1
A
496 513Right-handed alpha
Helix 11
AB2
A
513 522Right-handed alpha
Helix 12
AB3
A
529 539Right-handed alpha
Helix 13
AB4
A
543 577Right-handed alpha
Helix 14
AB5
A
621 640Right-handed alpha
Helix 15
AB6
A
640 645Right-handed alpha
Helix 16
AB7
A
668 679Right-handed alpha
Helix 17
AB8
A
680 689Right-handed alpha
Helix 18
AB9
A
691 697Right-handed alpha
Helix 19
AC1
A
697 714Right-handed alpha
Helix 20
AC2
A
714 724Right-handed alpha
Helix 21
AC3
A
724 746Right-handed alpha
Helix 22
AC4
A
747 750Right-handed 310
Helix 23
AC5
A
756 780Right-handed alpha
Helix 24
AC6
A
789 801Right-handed alpha
Helix 25
AC7
A
802 804Right-handed 310
Helix 26
AC8
A
805 816Right-handed alpha
Helix 27
AC9
A
822 832Right-handed alpha
Helix 28
AD1
A
845 862Right-handed alpha
Helix 29
AD2
A
865 882Right-handed alpha
Helix 30
AD3
A
885 895Right-handed alpha
Helix 31
AD4
A
904 906Right-handed 310
Helix 32
AD5
A
907 918Right-handed alpha
Helix 33
AD6
A
928 941Right-handed alpha
Helix 34
AD7
A
954 966Right-handed alpha
Helix 35
AD8
A
969 983Right-handed alpha
Helix 36
AD9
A
983 989Right-handed alpha
Helix 37
AE1
A
995 1019Right-handed alpha
Helix 38
AE2
A
1032 1046Right-handed alpha
Helix 39
AE3
A
1054 1070Right-handed alpha
Helix 40
AE4
A
1082 1087Right-handed alpha
Helix 41
AE5
A
1091 1100Right-handed alpha
Helix 42
AE6
A
1105 1107Right-handed 310
Helix 43
AE7
A
1108 1120Right-handed alpha
Helix 44
AE8
A
1133 1153Right-handed alpha
Helix 45
AE9
A
1154 1165Right-handed alpha
Helix 46
AF1
A
1170 1184Right-handed alpha
Helix 47
AF2
A
1188 1208Right-handed alpha
Helix 48
AF3
A
1219 1234Right-handed alpha
Helix 49
AF4
A
1235 1247Right-handed alpha
Helix 50
AF5
A
1253 1269Right-handed alpha
Helix 51
AF6
A
1275 1292Right-handed alpha
Helix 52
AF7
A
1308 1313Right-handed alpha
Helix 53
AF8
A
1314 1316Right-handed 310
Helix 54
AF9
A
1319 1336Right-handed alpha
Helix 55
AG1
A
1340 1355Right-handed alpha
Helix 56
AG2
A
1357 1371Right-handed alpha
Helix 57
AG3
A
1373 1385Right-handed alpha
Helix 58
AG4
A
1390 1404Right-handed alpha
Helix 59
AG5
A
1434 1442Right-handed alpha
Helix 60
AG6
A
1447 1462Right-handed alpha
Helix 61
AG7
A
1467 1486Right-handed alpha
Helix 62
AG8
A
1507 1514Right-handed alpha
Helix 63
AG9
A
1554 1559Right-handed alpha
Helix 64
AH1
A
1565 1572Right-handed alpha
Helix 65
AH2
C
65 98Right-handed alpha
Helix 66
AH3
C
102 112Right-handed alpha
Helix 67
AH4
C
114 146Right-handed alpha
Helix 68
AH5
C
151 176Right-handed alpha
Helix 69
AH6
C
176 244Right-handed alpha
Helix 70
AH7
C
245 247Right-handed 310
Helix 71
AH8
D
65 98Right-handed alpha
Helix 72
AH9
D
114 145Right-handed alpha
Helix 73
AI1
D
148 176Right-handed alpha
Helix 74
AI2
D
178 247Right-handed alpha
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There are 3 sheets in PDB entry 7VF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 658first strand
Strand 2
A
952 953parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1126 1128first strand
Strand 2
A
1518 1520parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1549 1551first strand
Strand 2
D
111 113anti-parallel
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