Analysis of interatomic Contacts of Structural Units in PDB entry:
7VF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VF6 entry

There are 2 chains in PDB entry 7VF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLU 367
B
 GLY 2GLU 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 7VF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 32Right-handed alpha
Helix 2
AA2
A
63 68Right-handed 310
Helix 3
AA3
A
83 96Right-handed alpha
Helix 4
AA4
A
100 102Right-handed 310
Helix 5
AA5
A
114 123Right-handed alpha
Helix 6
AA6
A
125 131Right-handed alpha
Helix 7
AA7
A
136 146Right-handed alpha
Helix 8
AA8
A
151 161Right-handed 310
Helix 9
AA9
A
167 178Right-handed alpha
Helix 10
AB1
A
189 193Right-handed 310
Helix 11
AB2
A
208 217Right-handed alpha
Helix 12
AB3
A
219 223Right-handed 310
Helix 13
AB4
A
224 230Right-handed alpha
Helix 14
AB5
A
258 263Right-handed alpha
Helix 15
AB6
A
282 294Right-handed alpha
Helix 16
AB7
A
304 309Right-handed alpha
Helix 17
AB8
A
310 313Right-handed 310
Helix 18
AB9
A
325 337Right-handed alpha
Helix 19
AC1
A
340 342Right-handed 310
Helix 20
AC2
A
359 367Right-handed alpha
Helix 21
AC3
B
17 32Right-handed alpha
Helix 22
AC4
B
63 68Right-handed 310
Helix 23
AC5
B
83 96Right-handed alpha
Helix 24
AC6
B
100 102Right-handed 310
Helix 25
AC7
B
114 123Right-handed alpha
Helix 26
AC8
B
125 131Right-handed alpha
Helix 27
AC9
B
136 146Right-handed alpha
Helix 28
AD1
B
151 161Right-handed 310
Helix 29
AD2
B
167 177Right-handed alpha
Helix 30
AD3
B
189 193Right-handed 310
Helix 31
AD4
B
208 217Right-handed alpha
Helix 32
AD5
B
219 223Right-handed 310
Helix 33
AD6
B
224 230Right-handed alpha
Helix 34
AD7
B
258 263Right-handed alpha
Helix 35
AD8
B
282 294Right-handed alpha
Helix 36
AD9
B
304 309Right-handed alpha
Helix 37
AE1
B
310 313Right-handed 310
Helix 38
AE2
B
321 325Right-handed 310
Helix 39
AE3
B
326 337Right-handed alpha
Helix 40
AE4
B
340 342Right-handed 310
Helix 41
AE5
B
359 367Right-handed alpha
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There are 8 sheets in PDB entry 7VF6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
72 82parallel
Strand 3
A
104 106parallel
Strand 4
A
163 164parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
72 82parallel
Strand 3
A
36 42parallel
Strand 4
A
181 185parallel
Strand 5
A
4 10parallel
Strand 6
A
233 239parallel
Strand 7
A
298 302parallel
Strand 8
A
344 350parallel
Strand 9
A
353 356anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
55 59anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
277 278anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 113first strand
Strand 2
B
72 82parallel
Strand 3
B
104 106parallel
Strand 4
B
163 164parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 113first strand
Strand 2
B
72 82parallel
Strand 3
B
36 42parallel
Strand 4
B
181 185parallel
Strand 5
B
4 10parallel
Strand 6
B
233 239parallel
Strand 7
B
298 302parallel
Strand 8
B
344 350parallel
Strand 9
B
353 356anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
55 59anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 245first strand
Strand 2
B
277 278anti-parallel
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