Analysis of interatomic Contacts of Structural Units in PDB entry:
7VF9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VF9 entry

There are 6 chains in PDB entry 7VF9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 8	PHE 230
B	ASN 6	ASP 232
C	TYR 3	THR 1356
D	GLU 16	GLY 1376
E	ALA 2	ASP 68
F	THR 57	GLN 334

There are118 helices in PDB entry 7VF9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	37	Right-handed alpha
Helix 2	AA2	A	37	50	Right-handed alpha
Helix 3	AA3	A	77	85	Right-handed alpha
Helix 4	AA4	A	86	88	Right-handed 310
Helix 5	AA5	A	111	115	Right-handed 310
Helix 6	AA6	A	211	229	Right-handed alpha
Helix 7	AA7	B	35	50	Right-handed alpha
Helix 8	AA8	B	77	86	Right-handed alpha
Helix 9	AA9	B	113	115	Right-handed 310
Helix 10	AB1	B	211	224	Right-handed alpha
Helix 11	AB2	C	5	9	Right-handed 310
Helix 12	AB3	C	28	40	Right-handed alpha
Helix 13	AB4	C	52	60	Right-handed alpha
Helix 14	AB5	C	85	93	Right-handed alpha
Helix 15	AB6	C	210	217	Right-handed alpha
Helix 16	AB7	C	220	229	Right-handed alpha
Helix 17	AB8	C	275	286	Right-handed alpha
Helix 18	AB9	C	295	300	Right-handed 310
Helix 19	AC1	C	323	334	Right-handed alpha
Helix 20	AC2	C	350	357	Right-handed alpha
Helix 21	AC3	C	363	376	Right-handed alpha
Helix 22	AC4	C	382	395	Right-handed alpha
Helix 23	AC5	C	403	415	Right-handed alpha
Helix 24	AC6	C	426	443	Right-handed alpha
Helix 25	AC7	C	460	485	Right-handed alpha
Helix 26	AC8	C	493	498	Right-handed alpha
Helix 27	AC9	C	500	511	Right-handed alpha
Helix 28	AD1	C	524	534	Right-handed alpha
Helix 29	AD2	C	556	560	Right-handed 310
Helix 30	AD3	C	613	617	Right-handed 310
Helix 31	AD4	C	651	655	Right-handed 310
Helix 32	AD5	C	661	665	Right-handed 310
Helix 33	AD6	C	669	673	Right-handed 310
Helix 34	AD7	C	675	679	Right-handed 310
Helix 35	AD8	C	680	691	Right-handed alpha
Helix 36	AD9	C	711	717	Right-handed alpha
Helix 37	AE1	C	825	830	Right-handed alpha
Helix 38	AE2	C	863	870	Right-handed alpha
Helix 39	AE3	C	901	912	Right-handed alpha
Helix 40	AE4	C	949	982	Right-handed alpha
Helix 41	AE5	C	1021	1055	Right-handed alpha
Helix 42	AE6	C	1118	1123	Right-handed alpha
Helix 43	AE7	C	1125	1151	Right-handed alpha
Helix 44	AE8	C	1154	1167	Right-handed alpha
Helix 45	AE9	C	1180	1191	Right-handed alpha
Helix 46	AF1	C	1192	1194	Right-handed 310
Helix 47	AF2	C	1206	1217	Right-handed alpha
Helix 48	AF3	C	1287	1296	Right-handed alpha
Helix 49	AF4	C	1299	1308	Right-handed alpha
Helix 50	AF5	C	1312	1326	Right-handed alpha
Helix 51	AF6	C	1335	1347	Right-handed alpha
Helix 52	AF7	D	26	33	Right-handed alpha
Helix 53	AF8	D	95	100	Right-handed 310
Helix 54	AF9	D	114	119	Right-handed alpha
Helix 55	AG1	D	122	129	Right-handed alpha
Helix 56	AG2	D	131	140	Right-handed alpha
Helix 57	AG3	D	161	173	Right-handed alpha
Helix 58	AG4	D	181	190	Right-handed alpha
Helix 59	AG5	D	193	204	Right-handed alpha
Helix 60	AG6	D	210	230	Right-handed alpha
Helix 61	AG7	D	233	237	Right-handed 310
Helix 62	AG8	D	246	250	Right-handed 310
Helix 63	AG9	D	263	281	Right-handed alpha
Helix 64	AH1	D	288	293	Right-handed alpha
Helix 65	AH2	D	294	308	Right-handed alpha
Helix 66	AH3	D	326	333	Right-handed alpha
Helix 67	AH4	D	339	343	Right-handed alpha
Helix 68	AH5	D	370	377	Right-handed alpha
Helix 69	AH6	D	377	388	Right-handed alpha
Helix 70	AH7	D	393	404	Right-handed alpha
Helix 71	AH8	D	407	416	Right-handed alpha
Helix 72	AH9	D	430	432	Right-handed 310
Helix 73	AI1	D	453	458	Right-handed alpha
Helix 74	AI2	D	473	480	Right-handed alpha
Helix 75	AI3	D	503	514	Right-handed alpha
Helix 76	AI4	D	529	540	Right-handed alpha
Helix 77	AI5	D	573	580	Right-handed alpha
Helix 78	AI6	D	597	610	Right-handed alpha
Helix 79	AI7	D	614	634	Right-handed alpha
Helix 80	AI8	D	640	644	Right-handed 310
Helix 81	AI9	D	649	671	Right-handed alpha
Helix 82	AJ1	D	674	703	Right-handed alpha
Helix 83	AJ2	D	720	728	Right-handed alpha
Helix 84	AJ3	D	736	741	Right-handed alpha
Helix 85	AJ4	D	768	786	Right-handed alpha
Helix 86	AJ5	D	788	802	Right-handed alpha
Helix 87	AJ6	D	865	875	Right-handed alpha
Helix 88	AJ7	D	914	925	Right-handed alpha
Helix 89	AJ8	D	926	929	Right-handed 310
Helix 90	AJ9	D	1051	1055	Right-handed 310
Helix 91	AK1	D	1137	1146	Right-handed alpha
Helix 92	AK2	D	1216	1222	Right-handed alpha
Helix 93	AK3	D	1226	1245	Right-handed alpha
Helix 94	AK4	D	1249	1261	Right-handed alpha
Helix 95	AK5	D	1280	1292	Right-handed alpha
Helix 96	AK6	D	1308	1315	Right-handed alpha
Helix 97	AK7	D	1318	1326	Right-handed alpha
Helix 98	AK8	D	1327	1339	Right-handed alpha
Helix 99	AK9	D	1359	1361	Right-handed 310
Helix 100	AL1	D	1362	1376	Right-handed alpha
Helix 101	AL2	E	5	14	Right-handed alpha
Helix 102	AL3	E	18	32	Right-handed alpha
Helix 103	AL4	E	45	57	Right-handed alpha
Helix 104	AL5	E	60	68	Right-handed alpha
Helix 105	AL6	F	61	71	Right-handed alpha
Helix 106	AL7	F	77	91	Right-handed alpha
Helix 107	AL8	F	92	103	Right-handed alpha
Helix 108	AL9	F	106	114	Right-handed alpha
Helix 109	AM1	F	120	137	Right-handed alpha
Helix 110	AM2	F	146	163	Right-handed alpha
Helix 111	AM3	F	173	195	Right-handed alpha
Helix 112	AM4	F	199	207	Right-handed alpha
Helix 113	AM5	F	210	219	Right-handed alpha
Helix 114	AM6	F	239	243	Right-handed alpha
Helix 115	AM7	F	250	271	Right-handed alpha
Helix 116	AM8	F	272	281	Right-handed alpha
Helix 117	AM9	F	305	324	Right-handed alpha
Helix 118	AN1	F	328	334	Right-handed alpha

There are 46 sheets in PDB entry 7VF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	198	206	anti-parallel
Strand 4	A	179	188	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	105	first strand
Strand 2	A	138	148	anti-parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	169	171	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	131	133	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	174	175	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	B	198	205	anti-parallel
Strand 4	B	182	188	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	61	first strand
Strand 2	B	140	148	anti-parallel
Strand 3	B	98	103	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	129	131	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	174	175	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1197	1198	parallel
Strand 3	C	705	706	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	79	first strand
Strand 2	C	98	108	anti-parallel
Strand 3	C	119	125	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	79	first strand
Strand 2	C	98	108	anti-parallel
Strand 3	C	130	131	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	142	first strand
Strand 2	C	145	149	anti-parallel
Strand 3	C	517	519	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	456	458	first strand
Strand 2	C	151	155	anti-parallel
Strand 3	C	535	536	parallel
Strand 4	C	577	578	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	164	first strand
Strand 2	C	174	181	anti-parallel
Strand 3	C	189	192	anti-parallel
Strand 4	C	198	201	anti-parallel
Strand 5	C	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	290	first strand
Strand 2	C	242	244	anti-parallel
Strand 3	C	231	235	anti-parallel
Strand 4	C	338	341	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	C	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	314	316	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	586	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	C	604	611	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	585	586	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	C	657	658	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	648	650	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	721	722	first strand
Strand 2	C	787	790	anti-parallel
Strand 3	C	773	774	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	755	757	first strand
Strand 2	C	736	741	anti-parallel
Strand 3	C	727	732	anti-parallel
Strand 4	C	781	782	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	794	795	first strand
Strand 2	C	798	799	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1224	1225	first strand
Strand 2	C	1240	1249	anti-parallel
Strand 3	C	1082	1084	anti-parallel
Strand 4	C	1090	1096	anti-parallel
Strand 5	C	821	823	parallel
Strand 6	C	1113	1115	anti-parallel
Strand 7	C	803	809	parallel
Strand 8	C	1240	1249	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	837	844	first strand
Strand 2	C	1065	1073	anti-parallel
Strand 3	C	931	940	anti-parallel
Strand 4	C	881	882	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	892	893	first strand
Strand 2	C	919	920	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1259	1261	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	434	437	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1259	1261	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	447	449	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1284	1286	first strand
Strand 2	D	344	346	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1350	1352	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	102	111	parallel
Strand 3	D	239	243	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	177	179	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	366	369	first strand
Strand 2	D	439	442	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	556	first strand
Strand 2	D	564	570	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	708	first strand
Strand 2	D	713	715	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	950	951	first strand
Strand 2	D	1016	1018	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	961	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	991	996	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	974	975	first strand
Strand 2	D	1001	1002	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1024	1026	first strand
Strand 2	D	1123	1125	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1098	1099	first strand
Strand 2	D	1077	1081	anti-parallel
Strand 3	D	1033	1038	anti-parallel
Strand 4	D	1114	1115	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1046	1047	first strand
Strand 2	D	1059	1061	anti-parallel
Strand 3	D	1106	1107	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1162	1163	first strand
Strand 2	D	1202	1203	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1277	1279	first strand
Strand 2	D	1263	1266	anti-parallel
Strand 3	D	1302	1304	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VF9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VF9