Analysis of interatomic Contacts of Structural Units in PDB entry:
7VFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VFI entry

There are 3 chains in PDB entry 7VFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 169MET 738
B
 THR 169MET 738
C
 ARG 116LEU 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 7VFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
170 176Right-handed alpha
Helix 2
AA2
A
177 179Right-handed 310
Helix 3
AA3
A
180 214Right-handed alpha
Helix 4
AA4
A
218 266Right-handed alpha
Helix 5
AA5
A
269 276Right-handed alpha
Helix 6
AA6
A
277 298Right-handed alpha
Helix 7
AA7
A
298 321Right-handed alpha
Helix 8
AA8
A
321 370Right-handed alpha
Helix 9
AA9
A
370 376Right-handed alpha
Helix 10
AB1
A
379 433Right-handed alpha
Helix 11
AB2
A
437 480Right-handed alpha
Helix 12
AB3
A
543 548Right-handed alpha
Helix 13
AB4
A
570 578Right-handed alpha
Helix 14
AB5
A
591 597Right-handed alpha
Helix 15
AB6
A
604 615Right-handed alpha
Helix 16
AB7
A
617 623Right-handed alpha
Helix 17
AB8
A
626 630Right-handed 310
Helix 18
AB9
A
632 637Right-handed alpha
Helix 19
AC1
A
640 654Right-handed alpha
Helix 20
AC2
A
672 679Right-handed alpha
Helix 21
AC3
A
719 726Right-handed alpha
Helix 22
AC4
A
730 737Right-handed alpha
Helix 23
AC5
B
170 178Right-handed alpha
Helix 24
AC6
B
180 214Right-handed alpha
Helix 25
AC7
B
217 267Right-handed alpha
Helix 26
AC8
B
269 276Right-handed alpha
Helix 27
AC9
B
278 321Right-handed alpha
Helix 28
AD1
B
321 370Right-handed alpha
Helix 29
AD2
B
370 378Right-handed alpha
Helix 30
AD3
B
379 433Right-handed alpha
Helix 31
AD4
B
437 473Right-handed alpha
Helix 32
AD5
B
542 549Right-handed alpha
Helix 33
AD6
B
570 578Right-handed alpha
Helix 34
AD7
B
591 597Right-handed alpha
Helix 35
AD8
B
604 615Right-handed alpha
Helix 36
AD9
B
619 624Right-handed 310
Helix 37
AE1
B
640 654Right-handed alpha
Helix 38
AE2
B
672 681Right-handed alpha
Helix 39
AE3
B
696 700Right-handed 310
Helix 40
AE4
B
719 726Right-handed alpha
Helix 41
AE5
B
730 738Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7VFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 525first strand
Strand 2
A
500 501anti-parallel
Strand 3
A
560 561anti-parallel
Strand 4
A
564 565anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 663first strand
Strand 2
A
691 693parallel
Strand 3
A
531 533parallel
Strand 4
A
705 710parallel
Strand 5
A
713 716anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
516 521first strand
Strand 2
B
503 508anti-parallel
Strand 3
B
556 558anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
530 532first strand
Strand 2
B
689 693parallel
Strand 3
B
659 663parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
560 561first strand
Strand 2
B
564 565anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
708 709first strand
Strand 2
B
714 716anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il