Analysis of interatomic Contacts of Structural Units in PDB entry:
7VFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VFJ entry

There are 6 chains in PDB entry 7VFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET -1THR 200
B
 MET 1GLN 220
C
 GLN 7GLU 237
D
 MET 1ALA 55
E
 MET -1THR 200
F
 MET 1GLN 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 7VFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 48Right-handed alpha
Helix 2
AA2
A
65 69Right-handed alpha
Helix 3
AA3
A
90 99Right-handed alpha
Helix 4
AA4
A
105 115Right-handed alpha
Helix 5
AA5
A
128 138Right-handed alpha
Helix 6
AA6
A
158 171Right-handed alpha
Helix 7
AA7
A
171 176Right-handed alpha
Helix 8
AA8
A
190 194Right-handed 310
Helix 9
AA9
B
2 15Right-handed alpha
Helix 10
AB1
B
21 40Right-handed alpha
Helix 11
AB2
B
42 75Right-handed alpha
Helix 12
AB3
B
79 84Right-handed alpha
Helix 13
AB4
B
88 120Right-handed alpha
Helix 14
AB5
B
123 134Right-handed alpha
Helix 15
AB6
B
136 149Right-handed alpha
Helix 16
AB7
B
158 162Right-handed 310
Helix 17
AB8
B
164 185Right-handed alpha
Helix 18
AB9
B
190 204Right-handed alpha
Helix 19
AC1
B
206 220Right-handed alpha
Helix 20
AC2
C
13 18Right-handed alpha
Helix 21
AC3
C
21 32Right-handed alpha
Helix 22
AC4
C
32 37Right-handed alpha
Helix 23
AC5
C
56 61Right-handed alpha
Helix 24
AC6
C
61 80Right-handed alpha
Helix 25
AC7
C
86 96Right-handed alpha
Helix 26
AC8
C
96 120Right-handed alpha
Helix 27
AC9
C
126 147Right-handed alpha
Helix 28
AD1
C
154 185Right-handed alpha
Helix 29
AD2
C
195 197Right-handed 310
Helix 30
AD3
C
198 229Right-handed alpha
Helix 31
AD4
C
232 237Right-handed 310
Helix 32
AD5
D
17 54Right-handed alpha
Helix 33
AD6
E
40 49Right-handed alpha
Helix 34
AD7
E
70 75Right-handed alpha
Helix 35
AD8
E
90 98Right-handed alpha
Helix 36
AD9
E
106 114Right-handed alpha
Helix 37
AE1
E
123 127Right-handed 310
Helix 38
AE2
E
128 138Right-handed alpha
Helix 39
AE3
E
139 142Right-handed 310
Helix 40
AE4
E
158 176Right-handed alpha
Helix 41
AE5
F
2 16Right-handed alpha
Helix 42
AE6
F
22 40Right-handed alpha
Helix 43
AE7
F
42 67Right-handed alpha
Helix 44
AE8
F
88 111Right-handed alpha
Helix 45
AE9
F
111 120Right-handed alpha
Helix 46
AF1
F
122 152Right-handed alpha
Helix 47
AF2
F
158 166Right-handed alpha
Helix 48
AF3
F
169 185Right-handed alpha
Helix 49
AF4
F
190 220Right-handed alpha
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There are 6 sheets in PDB entry 7VFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
5 9anti-parallel
Strand 3
A
55 57anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
148 151parallel
Strand 3
A
179 182parallel
Strand 4
A
29 33parallel
Strand 5
A
195 198parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
63 64anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 20first strand
Strand 2
E
5 10anti-parallel
Strand 3
E
55 57anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
77 79first strand
Strand 2
E
147 150parallel
Strand 3
E
178 181parallel
Strand 4
E
29 32parallel
Strand 5
E
195 197parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 60first strand
Strand 2
E
63 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il