Analysis of interatomic Contacts of Structural Units in PDB entry:
7VFQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VFQ entry

There are 4 chains in PDB entry 7VFQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 42	GLU 438
B	VAL 42	GLU 438
C	VAL 42	GLU 438
D	VAL 42	GLU 438

There are 80 helices in PDB entry 7VFQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	71	Right-handed alpha
Helix 2	AA2	A	84	86	Right-handed 310
Helix 3	AA3	A	87	99	Right-handed alpha
Helix 4	AA4	A	111	118	Right-handed alpha
Helix 5	AA5	A	124	132	Right-handed alpha
Helix 6	AA6	A	133	135	Right-handed 310
Helix 7	AA7	A	136	142	Right-handed alpha
Helix 8	AA8	A	164	171	Right-handed alpha
Helix 9	AA9	A	178	191	Right-handed alpha
Helix 10	AB1	A	200	202	Right-handed 310
Helix 11	AB2	A	203	214	Right-handed alpha
Helix 12	AB3	A	232	248	Right-handed alpha
Helix 13	AB4	A	258	267	Right-handed alpha
Helix 14	AB5	A	279	287	Right-handed alpha
Helix 15	AB6	A	326	339	Right-handed alpha
Helix 16	AB7	A	340	347	Right-handed alpha
Helix 17	AB8	A	361	368	Right-handed alpha
Helix 18	AB9	A	372	383	Right-handed alpha
Helix 19	AC1	A	392	409	Right-handed alpha
Helix 20	AC2	A	413	432	Right-handed alpha
Helix 21	AC3	B	59	71	Right-handed alpha
Helix 22	AC4	B	84	86	Right-handed 310
Helix 23	AC5	B	87	99	Right-handed alpha
Helix 24	AC6	B	111	118	Right-handed alpha
Helix 25	AC7	B	124	132	Right-handed alpha
Helix 26	AC8	B	133	135	Right-handed 310
Helix 27	AC9	B	136	142	Right-handed alpha
Helix 28	AD1	B	164	171	Right-handed alpha
Helix 29	AD2	B	178	191	Right-handed alpha
Helix 30	AD3	B	200	202	Right-handed 310
Helix 31	AD4	B	203	214	Right-handed alpha
Helix 32	AD5	B	232	248	Right-handed alpha
Helix 33	AD6	B	258	267	Right-handed alpha
Helix 34	AD7	B	279	288	Right-handed alpha
Helix 35	AD8	B	326	339	Right-handed alpha
Helix 36	AD9	B	340	347	Right-handed alpha
Helix 37	AE1	B	361	368	Right-handed alpha
Helix 38	AE2	B	372	383	Right-handed alpha
Helix 39	AE3	B	392	409	Right-handed alpha
Helix 40	AE4	B	413	432	Right-handed alpha
Helix 41	AE5	C	59	71	Right-handed alpha
Helix 42	AE6	C	84	86	Right-handed 310
Helix 43	AE7	C	87	99	Right-handed alpha
Helix 44	AE8	C	111	118	Right-handed alpha
Helix 45	AE9	C	124	132	Right-handed alpha
Helix 46	AF1	C	133	135	Right-handed 310
Helix 47	AF2	C	136	143	Right-handed alpha
Helix 48	AF3	C	164	171	Right-handed alpha
Helix 49	AF4	C	178	192	Right-handed alpha
Helix 50	AF5	C	200	202	Right-handed 310
Helix 51	AF6	C	203	214	Right-handed alpha
Helix 52	AF7	C	232	248	Right-handed alpha
Helix 53	AF8	C	258	267	Right-handed alpha
Helix 54	AF9	C	279	287	Right-handed alpha
Helix 55	AG1	C	326	339	Right-handed alpha
Helix 56	AG2	C	340	347	Right-handed alpha
Helix 57	AG3	C	361	368	Right-handed alpha
Helix 58	AG4	C	372	383	Right-handed alpha
Helix 59	AG5	C	392	410	Right-handed alpha
Helix 60	AG6	C	413	432	Right-handed alpha
Helix 61	AG7	D	59	71	Right-handed alpha
Helix 62	AG8	D	84	86	Right-handed 310
Helix 63	AG9	D	87	99	Right-handed alpha
Helix 64	AH1	D	111	118	Right-handed alpha
Helix 65	AH2	D	124	132	Right-handed alpha
Helix 66	AH3	D	133	135	Right-handed 310
Helix 67	AH4	D	136	142	Right-handed alpha
Helix 68	AH5	D	164	172	Right-handed alpha
Helix 69	AH6	D	178	192	Right-handed alpha
Helix 70	AH7	D	200	202	Right-handed 310
Helix 71	AH8	D	203	214	Right-handed alpha
Helix 72	AH9	D	232	248	Right-handed alpha
Helix 73	AI1	D	258	267	Right-handed alpha
Helix 74	AI2	D	279	287	Right-handed alpha
Helix 75	AI3	D	326	339	Right-handed alpha
Helix 76	AI4	D	340	347	Right-handed alpha
Helix 77	AI5	D	361	368	Right-handed alpha
Helix 78	AI6	D	372	383	Right-handed alpha
Helix 79	AI7	D	392	409	Right-handed alpha
Helix 80	AI8	D	414	432	Right-handed alpha

There are 20 sheets in PDB entry 7VFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	80	first strand
Strand 2	A	43	49	parallel
Strand 3	A	104	108	parallel
Strand 4	A	316	320	anti-parallel
Strand 5	A	151	153	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	148	149	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	A	350	351	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	276	first strand
Strand 2	A	159	163	anti-parallel
Strand 3	A	296	299	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	226	228	anti-parallel
Strand 3	A	436	437	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	80	first strand
Strand 2	B	43	49	parallel
Strand 3	B	104	108	parallel
Strand 4	B	316	320	anti-parallel
Strand 5	B	151	153	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	148	149	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	350	351	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	276	first strand
Strand 2	B	159	163	anti-parallel
Strand 3	B	296	299	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	221	first strand
Strand 2	B	226	228	anti-parallel
Strand 3	B	436	437	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	80	first strand
Strand 2	C	43	49	parallel
Strand 3	C	104	108	parallel
Strand 4	C	316	320	anti-parallel
Strand 5	C	151	153	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	148	149	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	350	351	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	276	first strand
Strand 2	C	159	163	anti-parallel
Strand 3	C	296	299	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	221	first strand
Strand 2	C	226	228	anti-parallel
Strand 3	C	436	437	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	80	first strand
Strand 2	D	43	49	parallel
Strand 3	D	104	108	parallel
Strand 4	D	316	320	anti-parallel
Strand 5	D	151	153	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	148	149	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	156	first strand
Strand 2	D	350	351	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	276	first strand
Strand 2	D	159	163	anti-parallel
Strand 3	D	296	299	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	221	first strand
Strand 2	D	225	228	anti-parallel
Strand 3	D	435	437	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VFQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VFQ