Analysis of interatomic Contacts of Structural Units in PDB entry:
7VFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VFR entry

There is 1 chain in PDB entry 7VFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 42GLU 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7VFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 71Right-handed alpha
Helix 2
AA2
A
84 86Right-handed 310
Helix 3
AA3
A
87 99Right-handed alpha
Helix 4
AA4
A
111 118Right-handed alpha
Helix 5
AA5
A
124 132Right-handed alpha
Helix 6
AA6
A
133 135Right-handed 310
Helix 7
AA7
A
136 142Right-handed alpha
Helix 8
AA8
A
164 172Right-handed alpha
Helix 9
AA9
A
178 191Right-handed alpha
Helix 10
AB1
A
200 202Right-handed 310
Helix 11
AB2
A
203 214Right-handed alpha
Helix 12
AB3
A
232 248Right-handed alpha
Helix 13
AB4
A
258 267Right-handed alpha
Helix 14
AB5
A
279 287Right-handed alpha
Helix 15
AB6
A
326 339Right-handed alpha
Helix 16
AB7
A
340 347Right-handed alpha
Helix 17
AB8
A
361 368Right-handed alpha
Helix 18
AB9
A
372 383Right-handed alpha
Helix 19
AC1
A
392 409Right-handed alpha
Helix 20
AC2
A
414 432Right-handed alpha
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There are 5 sheets in PDB entry 7VFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 80first strand
Strand 2
A
43 49parallel
Strand 3
A
104 108parallel
Strand 4
A
316 320anti-parallel
Strand 5
A
151 153anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
148 149anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
350 351anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 276first strand
Strand 2
A
159 163anti-parallel
Strand 3
A
296 299anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 222first strand
Strand 2
A
225 228anti-parallel
Strand 3
A
436 437parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il