Analysis of interatomic Contacts of Structural Units in PDB entry:
7VFS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VFS entry

There are 3 chains in PDB entry 7VFS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 82	PRO 1846
B	PHE 27	GLY 1072
D	PRO 227	THR 412

There are104 helices in PDB entry 7VFS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	115	Right-handed alpha
Helix 2	AA2	A	124	133	Right-handed alpha
Helix 3	AA3	A	133	151	Right-handed alpha
Helix 4	AA4	A	164	180	Right-handed alpha
Helix 5	AA5	A	186	192	Right-handed alpha
Helix 6	AA6	A	193	199	Right-handed 310
Helix 7	AA7	A	200	206	Right-handed alpha
Helix 8	AA8	A	206	218	Right-handed alpha
Helix 9	AA9	A	219	221	Right-handed 310
Helix 10	AB1	A	222	246	Right-handed alpha
Helix 11	AB2	A	290	294	Right-handed 310
Helix 12	AB3	A	299	312	Right-handed alpha
Helix 13	AB4	A	315	327	Right-handed alpha
Helix 14	AB5	A	332	344	Right-handed alpha
Helix 15	AB6	A	344	364	Right-handed alpha
Helix 16	AB7	A	365	406	Right-handed alpha
Helix 17	AB8	A	463	480	Right-handed alpha
Helix 18	AB9	A	481	501	Right-handed alpha
Helix 19	AC1	A	507	537	Right-handed alpha
Helix 20	AC2	A	537	542	Right-handed alpha
Helix 21	AC3	A	544	567	Right-handed alpha
Helix 22	AC4	A	574	589	Right-handed 310
Helix 23	AC5	A	591	605	Right-handed alpha
Helix 24	AC6	A	605	632	Right-handed alpha
Helix 25	AC7	A	648	662	Right-handed alpha
Helix 26	AC8	A	664	675	Right-handed alpha
Helix 27	AC9	A	682	684	Right-handed 310
Helix 28	AD1	A	685	695	Right-handed alpha
Helix 29	AD2	A	696	742	Right-handed alpha
Helix 30	AD3	A	766	782	Right-handed alpha
Helix 31	AD4	A	1141	1148	Right-handed alpha
Helix 32	AD5	A	1151	1169	Right-handed alpha
Helix 33	AD6	A	1177	1206	Right-handed alpha
Helix 34	AD7	A	1217	1236	Right-handed alpha
Helix 35	AD8	A	1244	1253	Right-handed alpha
Helix 36	AD9	A	1254	1259	Right-handed 310
Helix 37	AE1	A	1260	1265	Right-handed alpha
Helix 38	AE2	A	1265	1282	Right-handed alpha
Helix 39	AE3	A	1282	1305	Right-handed alpha
Helix 40	AE4	A	1350	1364	Right-handed alpha
Helix 41	AE5	A	1366	1376	Right-handed alpha
Helix 42	AE6	A	1389	1391	Right-handed 310
Helix 43	AE7	A	1392	1403	Right-handed alpha
Helix 44	AE8	A	1405	1418	Right-handed alpha
Helix 45	AE9	A	1435	1444	Right-handed alpha
Helix 46	AF1	A	1459	1470	Right-handed alpha
Helix 47	AF2	A	1470	1490	Right-handed alpha
Helix 48	AF3	A	1498	1525	Right-handed alpha
Helix 49	AF4	A	1526	1532	Right-handed alpha
Helix 50	AF5	A	1535	1556	Right-handed alpha
Helix 51	AF6	A	1557	1559	Right-handed 310
Helix 52	AF7	A	1561	1567	Right-handed 310
Helix 53	AF8	A	1568	1574	Right-handed alpha
Helix 54	AF9	A	1576	1582	Right-handed alpha
Helix 55	AG1	A	1582	1598	Right-handed alpha
Helix 56	AG2	A	1601	1622	Right-handed alpha
Helix 57	AG3	A	1640	1653	Right-handed alpha
Helix 58	AG4	A	1656	1664	Right-handed alpha
Helix 59	AG5	A	1682	1710	Right-handed alpha
Helix 60	AG6	A	1710	1715	Right-handed alpha
Helix 61	AG7	A	1722	1732	Right-handed alpha
Helix 62	AG8	A	1748	1755	Right-handed alpha
Helix 63	AG9	A	1792	1803	Right-handed alpha
Helix 64	AH1	A	1813	1828	Right-handed alpha
Helix 65	AH2	A	1836	1845	Right-handed alpha
Helix 66	AH3	B	29	53	Right-handed alpha
Helix 67	AH4	B	53	64	Right-handed alpha
Helix 68	AH5	B	74	110	Right-handed alpha
Helix 69	AH6	B	176	186	Right-handed alpha
Helix 70	AH7	B	186	199	Right-handed alpha
Helix 71	AH8	B	237	240	Right-handed 310
Helix 72	AH9	B	241	248	Right-handed alpha
Helix 73	AI1	B	261	265	Right-handed 310
Helix 74	AI2	B	266	281	Right-handed alpha
Helix 75	AI3	B	311	324	Right-handed alpha
Helix 76	AI4	B	332	345	Right-handed alpha
Helix 77	AI5	B	369	377	Right-handed alpha
Helix 78	AI6	B	396	405	Right-handed alpha
Helix 79	AI7	B	418	431	Right-handed alpha
Helix 80	AI8	B	431	437	Right-handed alpha
Helix 81	AI9	B	494	499	Right-handed alpha
Helix 82	AJ1	B	560	565	Right-handed alpha
Helix 83	AJ2	B	569	580	Right-handed alpha
Helix 84	AJ3	B	639	647	Right-handed alpha
Helix 85	AJ4	B	675	689	Right-handed alpha
Helix 86	AJ5	B	698	717	Right-handed alpha
Helix 87	AJ6	B	757	760	Right-handed 310
Helix 88	AJ7	B	761	770	Right-handed alpha
Helix 89	AJ8	B	817	828	Right-handed alpha
Helix 90	AJ9	B	829	831	Right-handed 310
Helix 91	AK1	B	855	857	Right-handed 310
Helix 92	AK2	B	867	871	Right-handed 310
Helix 93	AK3	B	874	879	Right-handed alpha
Helix 94	AK4	B	879	889	Right-handed alpha
Helix 95	AK5	B	1042	1047	Right-handed alpha
Helix 96	AK6	D	242	260	Right-handed alpha
Helix 97	AK7	D	272	276	Right-handed 310
Helix 98	AK8	D	302	314	Right-handed alpha
Helix 99	AK9	D	329	333	Right-handed 310
Helix 100	AL1	D	348	359	Right-handed alpha
Helix 101	AL2	D	362	365	Right-handed 310
Helix 102	AL3	D	366	380	Right-handed alpha
Helix 103	AL4	D	381	385	Right-handed 310
Helix 104	AL5	D	393	412	Right-handed alpha

There are 16 sheets in PDB entry 7VFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	282	284	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1309	1311	first strand
Strand 2	A	1341	1343	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1325	1328	first strand
Strand 2	A	1335	1338	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1668	1669	first strand
Strand 2	A	1678	1679	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	629	633	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	122	126	parallel
Strand 3	B	165	167	parallel
Strand 4	B	215	217	anti-parallel
Strand 5	B	206	210	anti-parallel
Strand 6	B	484	493	anti-parallel
Strand 7	B	458	467	anti-parallel
Strand 8	B	445	446	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	122	126	parallel
Strand 3	B	165	167	parallel
Strand 4	B	215	217	anti-parallel
Strand 5	B	206	210	anti-parallel
Strand 6	B	484	493	anti-parallel
Strand 7	B	458	467	anti-parallel
Strand 8	B	450	451	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	157	159	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	288	294	anti-parallel
Strand 3	B	308	309	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	288	294	anti-parallel
Strand 3	B	253	258	parallel
Strand 4	B	356	362	parallel
Strand 5	B	382	389	parallel
Strand 6	B	409	413	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	515	first strand
Strand 2	B	618	624	anti-parallel
Strand 3	B	600	611	anti-parallel
Strand 4	B	584	593	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	736	first strand
Strand 2	B	810	816	anti-parallel
Strand 3	B	792	797	anti-parallel
Strand 4	B	774	776	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	801	802	first strand
Strand 2	B	805	806	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	859	862	first strand
Strand 2	B	851	853	anti-parallel
Strand 3	B	1014	1016	anti-parallel
Strand 4	B	1001	1007	anti-parallel
Strand 5	B	989	994	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	892	904	first strand
Strand 2	B	972	983	anti-parallel
Strand 3	B	1036	1037	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	268	first strand
Strand 2	D	318	322	parallel
Strand 3	D	231	235	parallel
Strand 4	D	340	344	parallel
Strand 5	D	387	389	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VFS

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VFS