Analysis of interatomic Contacts of Structural Units in PDB entry:
7VFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VFV entry

There are 3 chains in PDB entry 7VFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 82	PRO 1846
B	PHE 27	GLY 1072
D	PRO 227	THR 412

There are105 helices in PDB entry 7VFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	114	Right-handed alpha
Helix 2	AA2	A	126	133	Right-handed alpha
Helix 3	AA3	A	133	152	Right-handed alpha
Helix 4	AA4	A	164	180	Right-handed alpha
Helix 5	AA5	A	186	192	Right-handed alpha
Helix 6	AA6	A	193	198	Right-handed 310
Helix 7	AA7	A	199	206	Right-handed alpha
Helix 8	AA8	A	206	219	Right-handed alpha
Helix 9	AA9	A	222	246	Right-handed alpha
Helix 10	AB1	A	289	294	Right-handed 310
Helix 11	AB2	A	299	312	Right-handed alpha
Helix 12	AB3	A	315	327	Right-handed alpha
Helix 13	AB4	A	332	344	Right-handed alpha
Helix 14	AB5	A	344	364	Right-handed alpha
Helix 15	AB6	A	365	405	Right-handed alpha
Helix 16	AB7	A	463	479	Right-handed alpha
Helix 17	AB8	A	481	501	Right-handed alpha
Helix 18	AB9	A	507	537	Right-handed alpha
Helix 19	AC1	A	537	542	Right-handed alpha
Helix 20	AC2	A	544	567	Right-handed alpha
Helix 21	AC3	A	574	589	Right-handed 310
Helix 22	AC4	A	591	605	Right-handed alpha
Helix 23	AC5	A	606	632	Right-handed alpha
Helix 24	AC6	A	648	662	Right-handed alpha
Helix 25	AC7	A	664	676	Right-handed alpha
Helix 26	AC8	A	678	683	Right-handed alpha
Helix 27	AC9	A	686	695	Right-handed alpha
Helix 28	AD1	A	698	741	Right-handed alpha
Helix 29	AD2	A	766	782	Right-handed alpha
Helix 30	AD3	A	1141	1148	Right-handed alpha
Helix 31	AD4	A	1151	1169	Right-handed alpha
Helix 32	AD5	A	1177	1206	Right-handed alpha
Helix 33	AD6	A	1217	1236	Right-handed alpha
Helix 34	AD7	A	1244	1253	Right-handed alpha
Helix 35	AD8	A	1254	1259	Right-handed 310
Helix 36	AD9	A	1260	1265	Right-handed alpha
Helix 37	AE1	A	1265	1282	Right-handed alpha
Helix 38	AE2	A	1282	1305	Right-handed alpha
Helix 39	AE3	A	1350	1363	Right-handed alpha
Helix 40	AE4	A	1366	1376	Right-handed alpha
Helix 41	AE5	A	1389	1392	Right-handed 310
Helix 42	AE6	A	1393	1403	Right-handed alpha
Helix 43	AE7	A	1405	1418	Right-handed alpha
Helix 44	AE8	A	1435	1444	Right-handed alpha
Helix 45	AE9	A	1459	1470	Right-handed alpha
Helix 46	AF1	A	1470	1490	Right-handed alpha
Helix 47	AF2	A	1497	1525	Right-handed alpha
Helix 48	AF3	A	1526	1531	Right-handed alpha
Helix 49	AF4	A	1535	1555	Right-handed alpha
Helix 50	AF5	A	1556	1559	Right-handed 310
Helix 51	AF6	A	1561	1567	Right-handed 310
Helix 52	AF7	A	1568	1574	Right-handed alpha
Helix 53	AF8	A	1576	1582	Right-handed alpha
Helix 54	AF9	A	1582	1598	Right-handed alpha
Helix 55	AG1	A	1601	1622	Right-handed alpha
Helix 56	AG2	A	1640	1653	Right-handed alpha
Helix 57	AG3	A	1656	1664	Right-handed alpha
Helix 58	AG4	A	1683	1709	Right-handed alpha
Helix 59	AG5	A	1710	1715	Right-handed alpha
Helix 60	AG6	A	1722	1733	Right-handed alpha
Helix 61	AG7	A	1748	1756	Right-handed alpha
Helix 62	AG8	A	1792	1803	Right-handed alpha
Helix 63	AG9	A	1813	1828	Right-handed alpha
Helix 64	AH1	A	1836	1845	Right-handed alpha
Helix 65	AH2	B	29	53	Right-handed alpha
Helix 66	AH3	B	53	64	Right-handed alpha
Helix 67	AH4	B	74	110	Right-handed alpha
Helix 68	AH5	B	176	186	Right-handed alpha
Helix 69	AH6	B	186	200	Right-handed alpha
Helix 70	AH7	B	237	240	Right-handed 310
Helix 71	AH8	B	241	248	Right-handed alpha
Helix 72	AH9	B	261	265	Right-handed 310
Helix 73	AI1	B	266	281	Right-handed alpha
Helix 74	AI2	B	311	324	Right-handed alpha
Helix 75	AI3	B	332	344	Right-handed alpha
Helix 76	AI4	B	369	377	Right-handed alpha
Helix 77	AI5	B	396	406	Right-handed alpha
Helix 78	AI6	B	418	431	Right-handed alpha
Helix 79	AI7	B	431	437	Right-handed alpha
Helix 80	AI8	B	494	498	Right-handed alpha
Helix 81	AI9	B	499	501	Right-handed 310
Helix 82	AJ1	B	560	565	Right-handed alpha
Helix 83	AJ2	B	569	580	Right-handed alpha
Helix 84	AJ3	B	624	627	Right-handed 310
Helix 85	AJ4	B	639	646	Right-handed alpha
Helix 86	AJ5	B	675	689	Right-handed alpha
Helix 87	AJ6	B	698	719	Right-handed alpha
Helix 88	AJ7	B	747	752	Right-handed alpha
Helix 89	AJ8	B	757	760	Right-handed 310
Helix 90	AJ9	B	761	770	Right-handed alpha
Helix 91	AK1	B	817	828	Right-handed alpha
Helix 92	AK2	B	829	831	Right-handed 310
Helix 93	AK3	B	855	857	Right-handed 310
Helix 94	AK4	B	867	871	Right-handed 310
Helix 95	AK5	B	874	879	Right-handed alpha
Helix 96	AK6	B	879	889	Right-handed alpha
Helix 97	AK7	B	1042	1047	Right-handed alpha
Helix 98	AK8	D	242	260	Right-handed alpha
Helix 99	AK9	D	272	276	Right-handed 310
Helix 100	AL1	D	305	314	Right-handed alpha
Helix 101	AL2	D	348	359	Right-handed alpha
Helix 102	AL3	D	361	365	Right-handed 310
Helix 103	AL4	D	366	379	Right-handed alpha
Helix 104	AL5	D	381	385	Right-handed 310
Helix 105	AL6	D	393	412	Right-handed alpha

There are 18 sheets in PDB entry 7VFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	282	284	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1309	1311	first strand
Strand 2	A	1341	1343	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1325	1328	first strand
Strand 2	A	1335	1338	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1668	1669	first strand
Strand 2	A	1678	1679	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	629	633	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	122	126	parallel
Strand 3	B	165	166	parallel
Strand 4	B	216	217	anti-parallel
Strand 5	B	206	210	anti-parallel
Strand 6	B	484	493	anti-parallel
Strand 7	B	458	467	anti-parallel
Strand 8	B	445	446	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	122	126	parallel
Strand 3	B	165	166	parallel
Strand 4	B	216	217	anti-parallel
Strand 5	B	206	210	anti-parallel
Strand 6	B	484	493	anti-parallel
Strand 7	B	458	467	anti-parallel
Strand 8	B	450	451	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	158	159	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	291	294	anti-parallel
Strand 3	B	256	258	parallel
Strand 4	B	357	362	parallel
Strand 5	B	383	389	parallel
Strand 6	B	409	413	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	308	309	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	515	first strand
Strand 2	B	618	622	anti-parallel
Strand 3	B	605	611	anti-parallel
Strand 4	B	584	588	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	593	first strand
Strand 2	B	600	602	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	736	first strand
Strand 2	B	810	816	anti-parallel
Strand 3	B	792	797	anti-parallel
Strand 4	B	774	776	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	801	802	first strand
Strand 2	B	805	806	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	859	862	first strand
Strand 2	B	851	853	anti-parallel
Strand 3	B	1014	1016	anti-parallel
Strand 4	B	1001	1007	anti-parallel
Strand 5	B	989	994	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	892	896	first strand
Strand 2	B	979	983	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	899	904	first strand
Strand 2	B	972	977	anti-parallel
Strand 3	B	1036	1038	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	264	265	first strand
Strand 2	D	318	321	parallel
Strand 3	D	232	235	parallel
Strand 4	D	340	344	parallel
Strand 5	D	387	389	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VFV