Analysis of interatomic Contacts of Structural Units in PDB entry:
7VG3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VG3 entry

There are 3 chains in PDB entry 7VG3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 621ARG 1563
C
 U 1 C 30
D
 G 1 A 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7VG3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
710 725Right-handed alpha
Helix 2
AA2
A
778 795Right-handed alpha
Helix 3
AA3
A
879 888Right-handed alpha
Helix 4
AA4
A
942 944Right-handed 310
Helix 5
AA5
A
953 958Right-handed alpha
Helix 6
AA6
A
961 972Right-handed alpha
Helix 7
AA7
A
972 983Right-handed alpha
Helix 8
AA8
A
992 998Right-handed alpha
Helix 9
AA9
A
1011 1034Right-handed alpha
Helix 10
AB1
A
1038 1050Right-handed alpha
Helix 11
AB2
A
1053 1060Right-handed alpha
Helix 12
AB3
A
1061 1063Right-handed 310
Helix 13
AB4
A
1064 1068Right-handed 310
Helix 14
AB5
A
1133 1146Right-handed alpha
Helix 15
AB6
A
1150 1159Right-handed alpha
Helix 16
AB7
A
1168 1176Right-handed alpha
Helix 17
AB8
A
1190 1196Right-handed alpha
Helix 18
AB9
A
1201 1208Right-handed alpha
Helix 19
AC1
A
1221 1243Right-handed alpha
Helix 20
AC2
A
1247 1259Right-handed alpha
Helix 21
AC3
A
1260 1271Right-handed alpha
Helix 22
AC4
A
1273 1277Right-handed 310
Helix 23
AC5
A
1281 1293Right-handed alpha
Helix 24
AC6
A
1316 1329Right-handed alpha
Helix 25
AC7
A
1335 1344Right-handed alpha
Helix 26
AC8
A
1356 1369Right-handed alpha
Helix 27
AC9
A
1407 1422Right-handed alpha
Helix 28
AD1
A
1475 1488Right-handed alpha
Helix 29
AD2
A
1544 1562Right-handed alpha
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There are 7 sheets in PDB entry 7VG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
629 631first strand
Strand 2
A
1124 1126anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 691first strand
Strand 2
A
696 700anti-parallel
Strand 3
A
650 661anti-parallel
Strand 4
A
706 709anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 691first strand
Strand 2
A
696 700anti-parallel
Strand 3
A
650 661anti-parallel
Strand 4
A
670 675anti-parallel
Strand 5
A
764 766anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
938 941first strand
Strand 2
A
900 903anti-parallel
Strand 3
A
854 858anti-parallel
Strand 4
A
843 847anti-parallel
Strand 5
A
946 949anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1372 1377first strand
Strand 2
A
1383 1390anti-parallel
Strand 3
A
1395 1398anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1372 1377first strand
Strand 2
A
1383 1390anti-parallel
Strand 3
A
1401 1402anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1494 1498first strand
Strand 2
A
1522 1527anti-parallel
Strand 3
A
1535 1538anti-parallel
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